Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42800 141 / 3e-39 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT1G61720 131 / 9e-36 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 131 / 1e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G45400 129 / 8e-35 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 113 / 4e-29 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT2G33590 111 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 105 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 103 / 1e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 101 / 6e-25 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09500 100 / 8e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032370 [exp] 421 / 9e-149 AT1G61720 171 / 3e-50 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023096 [exp] 334 / 2e-114 AT5G42800 173 / 1e-50 dihydroflavonol 4-reductase (.1) Lus10023097 [exp] 237 / 5e-79 AT1G09510 86 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 140 / 6e-39 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 130 / 1e-35 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 130 / 2e-35 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 124 / 3e-33 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021294 [exp] 122 / 4e-32 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10019732 [exp] 117 / 1e-30 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G093300 [exp] 302 / 5e-102 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.003G138400 [exp] 297 / 3e-100 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1) Potri.001G415500 [exp] 153 / 4e-44 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G147702 [exp] 137 / 2e-38 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G229500 [exp] 137 / 6e-38 AT5G42800 522 / 0.0 dihydroflavonol 4-reductase (.1) Potri.002G148000 [exp] 136 / 9e-38 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G030700 [exp] 135 / 3e-37 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 134 / 1e-36 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 133 / 1e-36 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 133 / 1e-36 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10032369 pacid=23168632 polypeptide=Lus10032369 locus=Lus10032369.g ID=Lus10032369.BGIv1.0 annot-version=v1.0 ATGGAGAAATCCCAAACCAAAGTCTGCGTCACCGGCGGCACCGGCTACATCGGATCATTTCTTGTCAAGAAACTCCTGGAAAACGGCTACACAGTCCACG CCACTCTCCGAAGTCTCGATGACAAAGCTAAAGTGGGACTGTTGACTTCCCTCCAGAACGCCGATACCAATTTGATACTGTTCAAAGCCGACATCTACAA CCCGGACCAGTTCCAGTCAGCAATGGACGGCTGCCATTTCGTCTTCCACGTGGCGTACCCTCTCCAGCACCATTCAGACAGCGCCACGTACAAGGACAGG ATTGAAGCCATGGCCGAAGGGTCCAAGCGAATAGCCGAGTCGTGCGTTAGATCGGGGACAGTCAAGCGACTGATTTACACGGCGTCCGTCATGGCTGCTT CGCCGCTGTTTGATGACGGCAGTGAGTATGGGCCCACCGTCGACGAGTCGTGCTGGACGCCTCTCCACGTGTCGTTCCAGTACAGCGATCCTTTTACTTT GAATTTCTTCCCGTTTACTTCTGAGTCCAGTAGCATCTTTGATACTTCAATTAATTACTTCTTGGCTCTTGTCCACGTGGAGGACGTGTGTGAGGCGCTC GTTTTCTGCATGGAAAAGAAGACGCCCCTCAAAGGCAGGTTCGTGTGCGCAGCTGGCACCCTGAGCGTGAGGGAAATCGCCACGTACATACGGGACCGCC ACCCAGAGCTCCACGTCGATGCCACGCTAATGGGGGAAGGTGGAAAAGAGATCAAAGTTGATAATTCGAAGCTGAAGAAGATGGGATTTAGTTACAAGTA TGATACCAGGGGAATTATCGAGGAAAGCTTAGAGTGTGCCAAGCGGCTTGCTGCTCTTCCTGATCTTTGA
AA sequence Show only first row Show all	>Lus10032369 pacid=23168632 polypeptide=Lus10032369 locus=Lus10032369.g ID=Lus10032369.BGIv1.0 annot-version=v1.0 MEKSQTKVCVTGGTGYIGSFLVKKLLENGYTVHATLRSLDDKAKVGLLTSLQNADTNLILFKADIYNPDQFQSAMDGCHFVFHVAYPLQHHSDSATYKDR IEAMAEGSKRIAESCVRSGTVKRLIYTASVMAASPLFDDGSEYGPTVDESCWTPLHVSFQYSDPFTLNFFPFTSESSSIFDTSINYFLALVHVEDVCEAL VFCMEKKTPLKGRFVCAAGTLSVREIATYIRDRHPELHVDATLMGEGGKEIKVDNSKLKKMGFSYKYDTRGIIEESLECAKRLAALPDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10032369 [exp]	0	1
AT2G15020			unknown protein		Lus10026592 [exp]	1.4	0.9304
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	3.9	0.9305
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	7.3	0.9251
AT2G15020			unknown protein		Lus10013880 [exp]	7.5	0.9248
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	8.7	0.9158
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	10.7	0.9089
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	11.4	0.9041
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	11.7	0.9059
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	14.2	0.9077
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	14.7	0.9059

Compare expression of checked genes

Lus10032369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.