Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61720 171 / 3e-50 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G45400 165 / 8e-48 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 164 / 6e-47 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G27250 157 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G35420 137 / 9e-38 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G09510 127 / 1e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33590 122 / 7e-32 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 120 / 2e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 119 / 2e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G68540 118 / 1e-30 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023096 [exp] 558 / 0 AT5G42800 173 / 1e-50 dihydroflavonol 4-reductase (.1) Lus10032369 [exp] 420 / 2e-148 AT5G42800 141 / 3e-39 dihydroflavonol 4-reductase (.1) Lus10023097 [exp] 255 / 4e-85 AT1G09510 86 / 2e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 160 / 5e-46 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 158 / 4e-45 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004028 [exp] 156 / 2e-44 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 155 / 2e-44 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021294 [exp] 155 / 9e-44 AT4G27250 351 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004030 [exp] 147 / 6e-41 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138400 [exp] 406 / 4e-142 AT5G42800 202 / 9e-62 dihydroflavonol 4-reductase (.1) Potri.001G093300 [exp] 399 / 3e-139 AT5G42800 199 / 2e-60 dihydroflavonol 4-reductase (.1) Potri.001G415500 [exp] 186 / 7e-56 AT4G27250 422 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G030700 [exp] 177 / 3e-52 AT1G61720 443 / 2e-156 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G031700 [exp] 176 / 9e-52 AT1G61720 428 / 1e-150 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 167 / 6e-49 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 165 / 5e-48 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 159 / 1e-45 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 158 / 2e-45 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 158 / 2e-45 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10032370 pacid=23168563 polypeptide=Lus10032370 locus=Lus10032370.g ID=Lus10032370.BGIv1.0 annot-version=v1.0 ATGGAGAAATCTCAAACCAAAGTCTGCGTCACCGGCGGCACCGGTTACATCGGCTCATGCCTGGTAAAGAAATTGCTGGAAAAAGGCTACACAGTCCACG CCACTCTCCGAAATCTTGATGACAAAGCTAAAGTAGGACTGCTGACTTCCCTCCCAAACGCCGAAACCAATTTGCTATTGTTCAAGGCCGACATTTACAA CCCGGAGGAGTTCCAGCCAGCAATCGGCGGGTGTGAATATGTCTTCCACGTGGCTTACCCACTCCAGCACCACTCCGAAAGCTCCACGTACAAGGACAAG GTTGAAGCGATGGCGGAAGGGTCGAAGAGAATAGCGGAGTCGTGCGTTAAATCCGGAACCGTTAAGCGGCTGATTTACACGGGCTCAGTTACGGCTGCTT CGCCGTTACTTGATGACGGGGTTGGTTACGGTACCACCGTCGACGAATCTTGTTGGACGCCTCTCAACCTCTCGTTCCAATACGGCGATCCCTTCACCCT GGATTACACTAGGGGGAAAACAATGGCAGAAAAGGAAATACTCAAGTACAACGACGAAACCGGCGACGGGGAGAAGCTGGAAGTGGTTGACCTAGTCACC GGATTGGTCGGCGGAGAAACGATCCTTTCACAAATGCCGGGGAGCGCAGCCATCATAGTTTCTCCGGCCACCGGGTTCCAGTTCGGCTACAACCACGGAC TGATGTTACTGCAGGAGCTTTTAGGTTCCGTGCCGCTTGTCCACGTGGATGACGTCGGCGAGGCGATGCTTTTTTGCATGGAAAAGAAGACGTCCTTCAA AGGAAGGTTCATATGCGCAGTTGGCAGCCTGAGCGTGAGAGAAATCGCCACGTATATTCATGACCACCATCCGGAGCTCCACGTCGACGCCACGCTAATG GGAGAAGCTGGGAAAGGAATACAAGTTGATAATTCAAAGCTTCAAAATGTAGGATTTTGTTACAAGTACGATACAAGTTGTATCATCGAAGAGAGCTTGG CGTGTTCGAAGCGGCTCGGTGGGCATTTGACAGAGTTTCCTTCTTGTCAGAAGCCCGCCTCTTAA
AA sequence Show only first row Show all	>Lus10032370 pacid=23168563 polypeptide=Lus10032370 locus=Lus10032370.g ID=Lus10032370.BGIv1.0 annot-version=v1.0 MEKSQTKVCVTGGTGYIGSCLVKKLLEKGYTVHATLRNLDDKAKVGLLTSLPNAETNLLLFKADIYNPEEFQPAIGGCEYVFHVAYPLQHHSESSTYKDK VEAMAEGSKRIAESCVKSGTVKRLIYTGSVTAASPLLDDGVGYGTTVDESCWTPLNLSFQYGDPFTLDYTRGKTMAEKEILKYNDETGDGEKLEVVDLVT GLVGGETILSQMPGSAAIIVSPATGFQFGYNHGLMLLQELLGSVPLVHVDDVGEAMLFCMEKKTSFKGRFICAVGSLSVREIATYIHDHHPELHVDATLM GEAGKGIQVDNSKLQNVGFCYKYDTSCIIEESLACSKRLGGHLTEFPSCQKPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Lus10032370 [exp]	0	1
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10007217 [exp]	2.4	0.9137
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	5.0	0.9338
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	7.5	0.9303
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	7.7	0.9243
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	9.3	0.9276
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	10.8	0.9269
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	11.0	0.9098
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	12.2	0.9000
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	15.2	0.9130
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	17.0	0.9009

Compare expression of checked genes

Lus10032370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.