Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64355 121 / 1e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023098 [exp] 273 / 9e-95 AT1G64355 152 / 7e-47 unknown protein Lus10003895 [exp] 144 / 6e-44 AT1G64355 179 / 8e-58 unknown protein Lus10001903 [exp] 131 / 3e-39 AT1G64355 184 / 2e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138500 [exp] 140 / 3e-42 AT1G64355 224 / 3e-75 unknown protein Potri.001G093001 [exp] 71 / 2e-16 AT1G64355 123 / 3e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12159 [flax] [poplar] DUF3593 Protein of unknown function (DUF3593)
Representative CDS sequence Show only first row Show all	>Lus10032371 pacid=23168664 polypeptide=Lus10032371 locus=Lus10032371.g ID=Lus10032371.BGIv1.0 annot-version=v1.0 ATGAACACCGGATGCCGGCGACCGGGATGCATTCCACCCACTCTTCCACTTACAGTTTCCTTGGCCGGTTATCAATTTCTCCTCCCAATTGTTCGCAAAG ACCCCTGTCGAACGGGCTTACAGTCGAGACACGTGGGAGCAATTAAAACGGCGAGCACCGGAGGAAGAAGAAGAAGGATTGTTTTATGCAGAGGATTGTT TCCTCCGGTCGTGGCGATGCCAAATATTGATTCGCAGAGCGTTTCCTATCAGCTCTTTGCGGTTTCGTTGCTACCTTACACTGGTTTCTTATACTTCATC ACCAAATCAAAGACTGCTCCACCCCTCACCCTCTTCGGATTCTACTTCTTGCTCGTCTTCGTCGGCGCTACAAAAAAATTGCAGTATGGAACTTCCTTAT CGAATGTGGATTGGTTGCATGGTGGGGTTGAGTCACTTCTCACTCTAACCAACTTGTTCATTTTAATGGGATTGAGACAAGGTCTTAGGAAAGTGATGAA TGATTTGGAGGCTAAGACTGAACCTAGTCCTAGTTCATCATCAATCAAAGAGAAAGAGGAGGCCTTTCATTAG
AA sequence Show only first row Show all	>Lus10032371 pacid=23168664 polypeptide=Lus10032371 locus=Lus10032371.g ID=Lus10032371.BGIv1.0 annot-version=v1.0 MNTGCRRPGCIPPTLPLTVSLAGYQFLLPIVRKDPCRTGLQSRHVGAIKTASTGGRRRRIVLCRGLFPPVVAMPNIDSQSVSYQLFAVSLLPYTGFLYFI TKSKTAPPLTLFGFYFLLVFVGATKKLQYGTSLSNVDWLHGGVESLLTLTNLFILMGLRQGLRKVMNDLEAKTEPSPSSSSIKEKEEAFH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64355			unknown protein		Lus10032371 [exp]	0	1
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	4.2	0.8752
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	5.1	0.8803
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	7.1	0.8845
AT1G27510			Protein of unknown function (D...		Lus10002370 [exp]	8.1	0.8632
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	8.2	0.8737
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	8.5	0.8621
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	9.9	0.8630
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	11.2	0.8597
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040007 [exp]	11.5	0.8571
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	11.6	0.8673

Compare expression of checked genes

Lus10032371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.