Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41850 162 / 9e-50 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023100 [exp] 317 / 1e-108 AT5G41850 172 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) Lus10003892 [exp] 192 / 1e-60 AT5G41850 297 / 2e-102 alpha/beta-Hydrolases superfamily protein (.1) Lus10021037 [exp] 188 / 1e-58 AT5G41850 305 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10003902 [exp] 147 / 5e-44 AT5G41850 231 / 3e-77 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092800 [exp] 195 / 2e-62 AT5G41850 314 / 1e-109 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032373 pacid=23168518 polypeptide=Lus10032373 locus=Lus10032373.g ID=Lus10032373.BGIv1.0 annot-version=v1.0 ATGAAATGCTATAACGAGTTGCATGTAGTTGATGGAGGCAACCACTCCTTAAGTGTAGGAGAGAAGCATCTCCTGTCAAATGGGTTAACTGAAGACGACG TTGAAACGAAAATTGCTGACGTTGTTGCTTCATTAGTAGTTAAATCTCCCGGAGGTGCATTTCGTTGCACCCAAATCAATCCAATTCAAGCTGCTACAAG TGTTTTCCCCGTGAAGCACCAGAGTAAGGATGCAAAGGAGGGATCATTGTCGCCTGTGGTTGTGCTTGCCCCTGGTTCCACCACTCCAGTATCTTCTGAT TGGATGATTAGGTGGAAGGCGATGTTAAAGAATGCTTTGGATGCTGCTGAAGTCATCACCTTTGACTATCCTTATATGTCTGGTGAAAGGAAAAGGGCAC CTCCAAAAGCAGAGAAGCTCGTCAAGTTTCACAAAGACATTGTGAAACAAACCGTTGAGAAGTACCCTGGACATCCTTTGGTTCTGGCTGGGAAAGCTGT AGGAGCAAGGTTTACAGGAAGCAACGATGTGTTTTGCCCCTTTGATATGTTGGAAGCGGTTAGAAAGAAGTTAAAATGCCGCAACAGGTTGCACGTGGTT GATGGAGGCGACTACTCCTTTAAGCTATCACAGCAACGTAGGAAGAAAGAAGACTCGAGCCAACACGAATCCGACCTGGAAGCTGTTGAGGCTGTTGCTT GCTTCGTTTCCAGCTGTCTCGGAGGAGCTTAG
AA sequence Show only first row Show all	>Lus10032373 pacid=23168518 polypeptide=Lus10032373 locus=Lus10032373.g ID=Lus10032373.BGIv1.0 annot-version=v1.0 MKCYNELHVVDGGNHSLSVGEKHLLSNGLTEDDVETKIADVVASLVVKSPGGAFRCTQINPIQAATSVFPVKHQSKDAKEGSLSPVVVLAPGSTTPVSSD WMIRWKAMLKNALDAAEVITFDYPYMSGERKRAPPKAEKLVKFHKDIVKQTVEKYPGHPLVLAGKAVGARFTGSNDVFCPFDMLEAVRKKLKCRNRLHVV DGGDYSFKLSQQRRKKEDSSQHESDLEAVEAVACFVSSCLGGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	0	1
AT5G54060		UF3GT	UDP-glucose:flavonoid 3-o-gluc...		Lus10004381 [exp]	1.0	0.9644
					Lus10000650 [exp]	2.0	0.9396
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Lus10034580 [exp]	2.2	0.9119
AT5G37730			unknown protein		Lus10033584 [exp]	3.9	0.9310
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	5.7	0.8950
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	7.5	0.9105
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	9.8	0.9111
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	10.6	0.9171
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	13.1	0.8884
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007210 [exp]	13.3	0.8600

Compare expression of checked genes

Lus10032373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.