Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23820 653 / 0 Pectin lyase-like superfamily protein (.1) AT5G41870 593 / 0 Pectin lyase-like superfamily protein (.1) AT3G62110 442 / 5e-153 Pectin lyase-like superfamily protein (.1) AT4G33440 410 / 3e-140 Pectin lyase-like superfamily protein (.1) AT3G61490 399 / 1e-135 Pectin lyase-like superfamily protein (.1.2.3) AT3G16850 397 / 3e-135 Pectin lyase-like superfamily protein (.1) AT3G48950 391 / 6e-133 Pectin lyase-like superfamily protein (.1) AT4G23500 385 / 3e-130 Pectin lyase-like superfamily protein (.1) AT2G23900 384 / 6e-130 Pectin lyase-like superfamily protein (.1) AT5G49215 376 / 4e-127 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023101 [exp] 827 / 0 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 724 / 0 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 443 / 4e-153 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 421 / 3e-144 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 419 / 1e-143 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037714 [exp] 401 / 7e-137 AT3G16850 558 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016837 [exp] 400 / 1e-136 AT3G16850 557 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017517 [exp] 396 / 1e-134 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 395 / 3e-134 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139100 [exp] 697 / 0 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 452 / 7e-157 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 446 / 1e-154 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 429 / 3e-147 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 424 / 2e-145 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 418 / 8e-144 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 415 / 2e-142 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 407 / 2e-139 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 404 / 8e-138 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 399 / 7e-136 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10032374 pacid=23168613 polypeptide=Lus10032374 locus=Lus10032374.g ID=Lus10032374.BGIv1.0 annot-version=v1.0 ATGCAACGCTTACTGCTACTCGCTCTCTTCAGCTTCTGCTGCTGCGCCGGCGTGTTCTTGACCGGCTCTGCGGCGGAAGTAATGACCTGCTCCGGGATAG TTCCGATGAGGCACAGGAGCGATAAGATTTCGATCGCGGACTACGGCGGCGTCGGGGACGGGAAGGCGATCAATACCAAGGCGTTTAAGGAAGCCATTTA CCGAATTGAGCATCTGAAGAGGCGAGGCGGCACTCTGCTTTACATACCGCCTGGGGAGTACTTGACTGAGAGCTTCAACCTCACCAGCCACATGACTCTC TACTTGGCCAAAGGCGCCATCATCAAAGCCACCCAGGAAACCTCGAACTGGCCTTTGATTGCCCCTCTGCCATCCTATGGAAGGGGGAGAGAGCTCCCTG GCGGAAGGTATATGAGCTTCATTCATGCTGATGGAGTACGTGACGTGATCATAACAGGTGAGAATGGCACGATTGACGGGCAAGGAGATGTTTGGTGGAA TATGTGGAGGCAGCGAACTCTTGAATACACCAGACCTAACCTAATCGAGTTCATAAACTCAACGGACATTATCATTTCCAATGTGATCTTCAAGGACTCT CCCTTTTGGAACATTCATCCCGTTTATAGCAGCAACATCGTGATCAGATACGTTACCATATTAGCTCCTCGAGACTCTCCTAATACCGATGGAGTCGATC CAGACTCAAGCTCCAACGTATGCATTGAGGATTCCTACATCTCAACCGGGGACGATCTAGTAGCAGTGAAGAGCGGCTGGGACGAATACGGAATCGCTTA CGCCCGTCCCAGCTCAGGCATCACCATCCGCCGCATCACTGGATCATCCCCATTCGCCGGAATCGCAGTGGGAAGCGAAACCTCAGGAGGCGTAGAGAAC GTCCTAGCAGAGAACATAAACCTCTACAACATGGGAGTAGGCCTACACGTGAAAACAAACCAAGGCAGAGGTGGCTTCATAAGGAACATCACGTTCGCCC ACGTCTACATGGAAGAAGTCCGAACAGGGATCAAGATCGCCGGCGATGTCGGTGACCACCCTGACGACGGTTTTGATCCGAATGCTCTTCCGGTTGTAAA GGGCCTGACTTTCCACAGCGTGTGGGGCGAAAAGGTTCTGCAGCCAGGGTTGATCCGTGGGTTGAAGGACTCTCCGTTCACCGATGTTTGCCTCTCGAAT ATCAACCTTCATAGTGTACTACCGCCGGCGACGAGAACGCCTACGCCGCTGTGGAAATGCACTGATGTTAAAGGAGCTTCCGTCCAGGTCAGCCCTTCTC CTTGCTCTGAACTCGCTTCCACTATCCCCTCTGGCTCTTGCTCCGATCACTTTTAA
AA sequence Show only first row Show all	>Lus10032374 pacid=23168613 polypeptide=Lus10032374 locus=Lus10032374.g ID=Lus10032374.BGIv1.0 annot-version=v1.0 MQRLLLLALFSFCCCAGVFLTGSAAEVMTCSGIVPMRHRSDKISIADYGGVGDGKAINTKAFKEAIYRIEHLKRRGGTLLYIPPGEYLTESFNLTSHMTL YLAKGAIIKATQETSNWPLIAPLPSYGRGRELPGGRYMSFIHADGVRDVIITGENGTIDGQGDVWWNMWRQRTLEYTRPNLIEFINSTDIIISNVIFKDS PFWNIHPVYSSNIVIRYVTILAPRDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYARPSSGITIRRITGSSPFAGIAVGSETSGGVEN VLAENINLYNMGVGLHVKTNQGRGGFIRNITFAHVYMEEVRTGIKIAGDVGDHPDDGFDPNALPVVKGLTFHSVWGEKVLQPGLIRGLKDSPFTDVCLSN INLHSVLPPATRTPTPLWKCTDVKGASVQVSPSPCSELASTIPSGSCSDHF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23820			Pectin lyase-like superfamily ...		Lus10032374 [exp]	0	1
AT5G60750			CAAX amino terminal protease f...		Lus10028751 [exp]	2.0	0.8252
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004321 [exp]	2.2	0.8710
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10002678 [exp]	2.4	0.8524
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030196 [exp]	3.2	0.8216
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	9.5	0.8411
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	12.5	0.7963
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	13.7	0.7974
					Lus10033414 [exp]	17.0	0.7902
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	22.4	0.7875
AT5G17560			BolA-like family protein (.1)		Lus10020347 [exp]	23.7	0.7967

Compare expression of checked genes

Lus10032374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.