Plant FIBer expression Database

Lus10032375 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64380 44 / 1e-05 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003889
[exp]
84 / 7e-20 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1)
Lus10001898
[exp]
79 / 5e-18 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G092400
[exp]
78 / 9e-18 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1)
Potri.003G139300
[exp]
70 / 8e-15 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10032375 pacid=23168480 polypeptide=Lus10032375 locus=Lus10032375.g ID=Lus10032375.BGIv1.0 annot-version=v1.0
ATGGAAAACGACTACCCAGTCCAGCTCACTTCCGAACTCGACGTCGGAACCTCTCTATCCCATCTCATACTAACCGGATCCGGAGCCAATACTCTCGACT
CCATCTTCTCTTTTAGCCATCACAACCTCCAAACCTCCCCCGCCGCAATCGAGCCGCTAGGTTCCCCCGTCTCTCTCCGACAGCGAGACCTCTTGCAGAA
ATTCAGCGACGAAAACAGAATTGGTGGCGGCGGTTCAATATCACGTCTCGGTTTCCCAACGCGCAGTAGTAGTCACGCGCTTCCTCCTGCAGCTCTAAAG
ACGACGAAGCTCCTCATCGGCCGCGCCGGCCGCTTACGCTTACGACCGCGCCGCTTACAAGCTACGAGGAGAGTACGCCAGGCTCAATTTCCCCAATCTG
AAGGACGACGACCCCGTGAAATTAGGGTTCGCGGATTCCGCGAAATTGAATTCCCTCAGGAGTACCGTCGATGCTAA
AA sequence
>Lus10032375 pacid=23168480 polypeptide=Lus10032375 locus=Lus10032375.g ID=Lus10032375.BGIv1.0 annot-version=v1.0
MENDYPVQLTSELDVGTSLSHLILTGSGANTLDSIFSFSHHNLQTSPAAIEPLGSPVSLRQRDLLQKFSDENRIGGGGSISRLGFPTRSSSHALPPAALK
TTKLLIGRAGRLRLRPRRLQATRRVRQAQFPQSEGRRPREIRVRGFREIEFPQEYRRC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10032375
[exp]
0 1
AT4G13150 unknown protein Lus10025925
[exp]
1.0 0.9547
AT1G64380 AP2_ERF Integrase-type DNA-binding sup... Lus10023102
[exp]
1.4 0.9205
AT2G20900 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.... Lus10018527
[exp]
3.5 0.8860
AT2G47400 CP12-1 CP12 domain-containing protein... Lus10010006
[exp]
6.0 0.8963
AT1G77380 AAP3, ATAAP3 amino acid permease 3 (.1) Lus10029702
[exp]
6.5 0.8730
AT4G19170 CCD4, NCED4 carotenoid cleavage dioxygenas... Lus10035696
[exp]
7.2 0.9001
AT1G06460 ACD31.2, ACD32.... ALPHA-CRYSTALLIN DOMAIN 31.2, ... Lus10020785
[exp]
9.5 0.8975
AT5G65840 Thioredoxin superfamily protei... Lus10011727
[exp]
11.0 0.9025
AT4G28940 Phosphorylase superfamily prot... Lus10023668
[exp]
12.3 0.8748
Lus10008409
[exp]
14.0 0.8919

Lus10032375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.