Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64385 88 / 5e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033958 [exp] 510 / 0 AT1G64385 204 / 1e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092300 [exp] 114 / 5e-28 AT1G64385 162 / 2e-46 unknown protein Potri.003G139400 [exp] 105 / 6e-25 AT1G64385 189 / 5e-57 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032376 pacid=23168617 polypeptide=Lus10032376 locus=Lus10032376.g ID=Lus10032376.BGIv1.0 annot-version=v1.0 ATGGAAATCGATCTAGCTCACCTTCGTCTTCTGCTTCTTCTTGTTGTTGTATTACTCCTCGCTGACTTGTCCTGGGCTGATGATACAAAGGTGGATGTGA ATGGGAAAAACAATCCGGATCCGAAGTTGAAACCTAACAACAGCTCAAACGACAAAGCTGGCGAGTTGAAATTAGGTGTTACAGATGATGGTGGACAAAA GGGAAAGAAGCCAAAGGAGAAGGATGATAAAGGAGTTGTGAATCAAGTGAATGAGGTAAAGAAAGGTGGTGTTGTTAATGATGGGGAAAGAAAAGATTTG AATGTCCAACTCCGGGATAAGGAGACTGGTAAAGGCAGTGAAGGTAGTGCTAGGCAAAGTGGAAATGAGAAGCTGAATGATGGGAAGGATACTAAACAGG AGGAAGCGGACTTAAAGGACGAGCAAGGAAAGAAGGAGATTTCACATGGTGAAGAGTGTGATCCTTCCAACAAGTGCTTGATTCAGGACAGTAATCTGGT TGCTTGCATTAGAGTTCCTGGAAATGATTCCCCAGACCTATTACTTCTGATTCAGAACGACGGTGAAGTTCCGGTCAGCGTCACAATTTTGAGTCCGGAG TTTGTTCAGCTGGAGAAGAAAAGCATTCAACTACAGCAAAAAGAACACAAAAAGAAAGGCAACTCTTGCTTTTACTTCCTCATACTTATCTGCAAGTGTA AGAATTCCAGCTGCCAACTGCCATACTTGGAACATTATTTAGCTTCTATTTACATGGTTCATTCGTTACTCGAACATCTTACACATAAGCCACTACCCTG CAAAGATGATGATCGCTGGTCAATGACTGCACAGGTCAAAGTGTCCATCAATGGCAAGGGACGGGAGAGCTCCATCGTTCTAAAGACGGGAGCCAGCAGC AGCTGCAGCCTTGACATAACTGATCTGATTGATCATCACTCCGGATCAGACAACATCGAAAACTCTCAAGGGTCCACTTATGCAACATCCTCCAATCTCC CTCTCTTCCTAGCATGCTTCGCCGGGTTATTAATTGTAGCAGCATCAGCGCGTGGGCTGTGGATTACCATATCAAGGAGGAGGAAACAGTCCAACAATGC AAGCTCAAATTACCAAAGGCTAGACATGGATTTGCCTGTTTCAGGCATGGGGAAGAAGACGCAATCAGATGATGGATGGGACAACAACTGGGGAGACGGT TGGGATGATGATGATGGTGGGGGTGATGAAGAGATGCCTAAGACTCCATCGGCAATGCCCGTCACGCCTAGCTTGTCCTCAAAAGGTCTGGCTTCGCGCA GCCGGTTGAGCAAAGATGGATGGAAAGATTAG
AA sequence Show only first row Show all	>Lus10032376 pacid=23168617 polypeptide=Lus10032376 locus=Lus10032376.g ID=Lus10032376.BGIv1.0 annot-version=v1.0 MEIDLAHLRLLLLLVVVLLLADLSWADDTKVDVNGKNNPDPKLKPNNSSNDKAGELKLGVTDDGGQKGKKPKEKDDKGVVNQVNEVKKGGVVNDGERKDL NVQLRDKETGKGSEGSARQSGNEKLNDGKDTKQEEADLKDEQGKKEISHGEECDPSNKCLIQDSNLVACIRVPGNDSPDLLLLIQNDGEVPVSVTILSPE FVQLEKKSIQLQQKEHKKKGNSCFYFLILICKCKNSSCQLPYLEHYLASIYMVHSLLEHLTHKPLPCKDDDRWSMTAQVKVSINGKGRESSIVLKTGASS SCSLDITDLIDHHSGSDNIENSQGSTYATSSNLPLFLACFAGLLIVAASARGLWITISRRRKQSNNASSNYQRLDMDLPVSGMGKKTQSDDGWDNNWGDG WDDDDGGGDEEMPKTPSAMPVTPSLSSKGLASRSRLSKDGWKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64385			unknown protein		Lus10032376 [exp]	0	1
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	1.7	0.9407
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10024887 [exp]	4.0	0.9071
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10007286 [exp]	4.2	0.9211
AT3G52220			unknown protein		Lus10039101 [exp]	5.3	0.9231
AT3G48140			B12D protein (.1)		Lus10042151 [exp]	6.0	0.9222
AT4G32930			unknown protein		Lus10005503 [exp]	6.2	0.9090
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	8.9	0.9166
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10003133 [exp]	8.9	0.8917
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	9.2	0.9226
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	10.0	0.9159

Compare expression of checked genes

Lus10032376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.