Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64390 976 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 936 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 619 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G48930 587 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 504 / 4e-174 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 500 / 1e-172 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44570 494 / 3e-170 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT2G44560 490 / 1e-168 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT1G70710 484 / 1e-166 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 474 / 1e-162 ATGH9B6 glycosyl hydrolase 9B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003888 [exp] 1083 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 1079 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10033957 [exp] 936 / 0 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 619 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10035316 [exp] 592 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10017402 [exp] 585 / 0 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10009724 [exp] 577 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10008208 [exp] 495 / 3e-170 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 471 / 5e-161 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092200 [exp] 1036 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 1026 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 620 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 609 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G356000 [exp] 603 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.010G109200 [exp] 488 / 1e-167 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 480 / 8e-165 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.014G126900 [exp] 474 / 5e-162 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.002G202400 [exp] 474 / 6e-162 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 469 / 2e-160 AT1G02800 593 / 0.0 cellulase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0203 [flax] [poplar] CBD PF09478 [flax] [poplar] CBM49 Carbohydrate binding domain CBM49 CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10032377 pacid=23168538 polypeptide=Lus10032377 locus=Lus10032377.g ID=Lus10032377.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCTCCCCTGCTTCTTCTTTCCTTACTCTGTTCTTTCACCTCTGTTTTCGCTGGCCATGACTACGGTCAGGCTCTCAGCAAGAGCATTCTCT TCTTCGAAGCTCAACGGTCTGGTTTCCTACCTCACAACCAGCGCATCACTTGGAGATCTAACTCCGGTCTCAATGACGGAAAAGCCAGCGGGGTGGATCT GGTTGGAGGATATTACGACGCCGGCGACAATGTGAAGTTCGGGCTTCCGATGGCGTTCACCGTCACGATGATGTCGTGGAGCATTATCGAGTACGGGAAG CAGATGGCGTCCAGCGGCGAGCTACGAAACGCCATGGAAGCTGTCAAGTGGGGGACTGATTACTTCATCAAGGCTCACCCTGAGCCTAATGTTCTCTACG GAGAGGTGGGAGATGGAACGACTGATCACTACTGCTGGCAAAGGCCGGAGGATATGACCACCGACCGCCGTGCTTACCGTATCGACCCCAGCAACCCAGG GTCGGATCTCGCCGGTGAGACCGCCGCCGCCATGGCTGCTGCCTCCATTGTTTTCCGCCGCTCTAACCCTGCCTACTCCCGCGAGCTTCTCAACCACGCA TATCAGCTGTTTGATTTTGCAAACAAGTACAGAGGCAAATACGACAGCAGTATCACTGTTGCTCAGAAATACTACCGCTCTGTCAGTGGCTACAATGATG AGTTGCTGTGGGCAGCAGCATGGATGTACCAAGCATCCAACAACCAGTACTACTTGAGCTACTTAGCTGAAAATGGTGATTCCATGGGTGGAACCGGATG GGGGATGACCGAGTTTGGTTGGGATGTTAAATATGCTGGTGTTCAGACCCTTGTCTCCAAGTTCTTGATGCAAGGAAGAGCTGGAAAATACGCTCCGGTA TTCGAGAAGTACCAGCAGAAGGCTGAGTACTACATGTGTTCTTGCTTGGGAAAGGGAAGCAGAAACATTCAGAAGACACCAGGTGGCTTGATTTTCAGGC AGAGATGGAACAATATGCAGTTCGTCACCAGTGCTTCCTTCCTTGCAACCGTCTACTCTGATTACTTGTCCTCTTCTCGTAAGAGCTTGCATTGCTCTGC AGGCACTGCCTCCCCCTCCGATCTCCTTGGATTCGCCAAGTCTCAGGTGGATTACATTTTGGGTGATAATCCTAGGGCAACGAGTTACATGGTTGGATAT GGGAACAACTACCCACAACAAGTACACCATAGGGCATCCTCCATTGTCTCCTACAAGAAGGACCCAAGGCCTATTAGCTGCCGTGGGGGTTACGCTACAT GGTTCAGTAGCAAATCAAGTGACCCCAATCAGCTTACTGGTGCGATCGTTGGTGGTCCCGATGCTTACGACAATTTTGCTGACGAGAGAGACAACTATGA GCAGACTGAGCCTGCTACCTACAACAATGCCCCTCTTCTTGGCATCCTTGCCCGTCTTGGTGCTGGACATGGTGGCTACAACCAGCTCCTCCCAGAAGTT GTACCAGCTCCTAGCCAGGAGAGGAAAGCTCCAGTGAAAGCTCCTGTCAAAGCTCCAGTGGATAAATATACTCCTGCGCCAGTTTCTAACTCTGCACCTA TTGCAATCAAGCAAAAGGTGACAACTTCCTGGAACCACCAAGGGAAAACCTACTACAGATACTCAGCCATAGTGACCAACTACTCACCAAAGCCACTGAA CAACATCAAGCTTTACATCAACAAGCTCTACGGTCCGATCTGGGGGCTGACCAAGTACGGCAACTCGTACGGTTTCCCAGCGTGGATCAAGTCTCTACCA GCTGGGAAAAGCATGGAATTCGTCTACATTCATACTGCTCCTTATGCAGATGTCTCTGTTTCAACCTACACATTGGCCTGA
AA sequence Show only first row Show all	>Lus10032377 pacid=23168538 polypeptide=Lus10032377 locus=Lus10032377.g ID=Lus10032377.BGIv1.0 annot-version=v1.0 MSAAPLLLLSLLCSFTSVFAGHDYGQALSKSILFFEAQRSGFLPHNQRITWRSNSGLNDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGK QMASSGELRNAMEAVKWGTDYFIKAHPEPNVLYGEVGDGTTDHYCWQRPEDMTTDRRAYRIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSRELLNHA YQLFDFANKYRGKYDSSITVAQKYYRSVSGYNDELLWAAAWMYQASNNQYYLSYLAENGDSMGGTGWGMTEFGWDVKYAGVQTLVSKFLMQGRAGKYAPV FEKYQQKAEYYMCSCLGKGSRNIQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLSSSRKSLHCSAGTASPSDLLGFAKSQVDYILGDNPRATSYMVGY GNNYPQQVHHRASSIVSYKKDPRPISCRGGYATWFSSKSSDPNQLTGAIVGGPDAYDNFADERDNYEQTEPATYNNAPLLGILARLGAGHGGYNQLLPEV VPAPSQERKAPVKAPVKAPVDKYTPAPVSNSAPIAIKQKVTTSWNHQGKTYYRYSAIVTNYSPKPLNNIKLYINKLYGPIWGLTKYGNSYGFPAWIKSLP AGKSMEFVYIHTAPYADVSVSTYTLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	0	1
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	1.7	0.8680
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	2.8	0.8498
AT5G65630		GTE7	global transcription factor gr...		Lus10010524 [exp]	4.5	0.8296
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021275 [exp]	5.3	0.8262
AT5G55960			unknown protein		Lus10022565 [exp]	6.3	0.8227
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10037617 [exp]	8.1	0.8268
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	8.9	0.8442
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	9.0	0.8490
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	9.8	0.7931
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	10.2	0.8107

Compare expression of checked genes

Lus10032377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.