Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69020 337 / 1e-103 Prolyl oligopeptidase family protein (.1) AT5G66960 204 / 4e-55 Prolyl oligopeptidase family protein (.1) AT1G50380 162 / 3e-41 Prolyl oligopeptidase family protein (.1) AT3G11410 143 / 1e-36 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT1G07430 143 / 2e-36 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 141 / 2e-36 HAI3 highly ABA-induced PP2C gene 3 (.1) AT4G26080 134 / 2e-33 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G59220 129 / 5e-32 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G57050 121 / 2e-29 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT5G51760 115 / 4e-27 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004631 [exp] 491 / 3e-162 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 482 / 4e-159 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10033955 [exp] 435 / 1e-146 AT1G07430 154 / 4e-43 highly ABA-induced PP2C gene 2 (.1) Lus10003887 [exp] 238 / 1e-70 AT2G29380 144 / 1e-39 highly ABA-induced PP2C gene 3 (.1) Lus10026659 [exp] 194 / 1e-57 AT1G69020 156 / 4e-45 Prolyl oligopeptidase family protein (.1) Lus10017568 [exp] 211 / 2e-57 AT5G66960 1124 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015387 [exp] 162 / 5e-41 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 156 / 2e-39 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10001832 [exp] 152 / 2e-39 AT2G29380 108 / 7e-26 highly ABA-induced PP2C gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137801 [exp] 383 / 2e-120 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G035900 [exp] 219 / 5e-60 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.001G092100 [exp] 208 / 7e-60 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.007G001300 [exp] 164 / 1e-41 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.015G018800 [exp] 156 / 1e-41 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 150 / 5e-39 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.008G059200 [exp] 149 / 8e-39 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 142 / 7e-37 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.009G037300 [exp] 131 / 2e-32 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.015G133900 [exp] 125 / 1e-30 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10032378 pacid=23168522 polypeptide=Lus10032378 locus=Lus10032378.g ID=Lus10032378.BGIv1.0 annot-version=v1.0 ATGGCGATCACCCGTTTCTTCACTTTAGCTTCTACGGTTCAAACCTCCAGCTACCGCCGCCTTCTTACTCCCCAAATCCACCACACATTCCCATTCTGCA GGAAAGACCCACCACCGGCGGCGAAGAAAGTCCCCTCCGCCGTCACCGCACATGGCCAAACCTGGCAGGACCCGTATCAATGGATGCGGAACACATCCAA CCAGGACTTCCTCGCTACATCCGCCAGGAGAACTCCTACGCTGCCGATTTCATTCCGGAGACCGACCAGCTGCGGCGGACTCTCGTCCGGGAAATGCGGA GTCGGATTCCGGCGAAACCGACCTCTCCTCAACGTTCGGGAAACTGAAAGGAAAGAGCATCCAGTTCTTTGTAGGAGGTCGGAAGAGAGTAATGAATATG GAATTGTGAAGAAGCTGTTGAGCAAGGAGCAGATTGTGCTTGATTGGAATGAAATTGCTGATCAATACGGTACAAAAGCTTCTCTCTTTGCTTTTTGTGA AAAACTGCTGCATCTCACTGTTGGCTTCACTGGTTTAATCTTGAAGCAATGCGATATCGAAGATCTCAACCCTGTACCTACAAACCTATGCAGCATTACT CCAGGATCGAACTACGTATTTTCGAGCTCAGTGTACCGTTTGGTTTTGCCGTCTCATGTGATGCCTGATGCTTTTGCTGACTACGACATGTCCAAAACGA CGTTCTCCATCGTATACCACGAAGAAGGGTGGAAAGACCTTTCCCGTGACCACTGCTGGGAACAAAAGCAAGGTGTTTCGCACGATGGTGTCGAGATTCC TCTAACGATTCTGTTCTCTCGAAAGGCTTGGAGGAAAGGCCAGTCACCTGGACTATTGGACGGATATGGAGCATATGGACTACCCCTGGATAAGAGCTGG AGCTCGGACAGACTGAACTTACTCGATCGTGGATGGGTGATTGCATTTGCAGATGTCAGGGGAGGTGGACGAGGCTGGGGAGATGAAGGAGGCAGCAATT CTTCGTGGCATGAATCAGGTACCAAACTAGCCAAACCAAACTCGATTCATGATTTCGTGTCATGTGGGAGCTTCCTCGTAGATGAAGGGTATGTTCACAG CAAGAAACTTGCTGCAGAAGGTGCAAGTGCAGGAGGACTCCTTGTTGCAGCTGCAATCAATATGAAGACCGATCTTTTTCGTGCCGCAATCTTGAAGGTT CCATTTCTGGATGTCTGCAACTCAATGATGGATCCGAGCTTGCCTCTAACAGAATTCGGCTACGAAGAGTACGGGAACCCACAGATCGAATCGAAGTTTG AGTGCATTCGAAACTACTCGCCTTACGATAACATCCAGCGTGGAACATGCCAGCCAGCAATGCTCGTCACAGCGTCATACAACGACTCGAGGGTGGGAGT GCGAGATGTTACATGCCCTAGCTGTTCGAGATCTGTGGTGCACAAGACGAACATGAACGCAGGCCATTCGGGAGAAGGTGGTCTATACTCTGGGTGTGAA GAGACTGCTTATGAATATGCTTTCCTTTTGGCAAAGAAGAGAAAGAATGTCCGGATCAGACCGACGTATAACAATTTAGGCAAAACAACGTCGTATATCA ACAAAATGAAGCGGATCATACAGTCGTCTGAAGAAGACAGCGACAACCGGTCCACCGTCGGCGGTGGGGAATCAGGAGAGTCGTCGTCGTCGTCCAGCCG CTGCAGGAGCGTCTCACACGGAATGGTGTCCGTGATCGGCCGCAAGAGGGCGATGGACGACGCCGTGGCGGTGGTTCCGGGGCTGGAAATAGGCGGATTA GACAACTACTTTGATTTCTTCGCTGTGTACGAAGGCAGGGGATTCGGATCAGCCGTGTCGGCGTCGTGCAGGAAGCGGATGCATCTGCTGGTGGCTATGG AGGCGGAGAAGAAGATGATTGGGGTGAAGGGAACTGATCAGATGGTGATGTGGAAGGAATTGATGGTCAATAGCTTTCTGGAAATGGACAGGGAGATCCG TTCGGTTGATCACCAGCAACCGGAGTACGAAGCCGCCGGTGATGAAGAGGATGAGGAGAACGCAGAGGCCGATAAGTCCACGGCGGTGGTGGTAATGCTT GGGAAGGAGGAGATCGTCGTGGCCAATTCCGGCGATTGTAAAGCCGTTTTGTCCCGCGGCGGTGCCTCCCTGCCTTTATCCACCGGAAACAGAACTGACT TGCCGGAGGAGCATCGTATCACCGGAGGAAAAGTTGCTACTACTGCTTCAAAGGCAACAGGAGACGATTCTGACCGCCGTCGTGTGATATCGGAGCCAGA GGTGACGGTGACGGAGCGGAGTGAATCGGACGAGTTGGTAGTAATAGCGTCGGAAGGAATGTGGGATGTGGTCCCCAACGACGCTGCATGTGCTGTAGCC GCCAAATGTTTCGACAGCGGGAGAAGGATGGGGTTCGCCGACGAGACCAGCGAGAATTGCGCGGCGGGAGCGGCGGTTTTCCTGGCTGAGCTGGCGATGG CTCGAGGGAGCCGGGAGAATATCAGTGTCATTGTTGTGAAATTGTAG
AA sequence Show only first row Show all	>Lus10032378 pacid=23168522 polypeptide=Lus10032378 locus=Lus10032378.g ID=Lus10032378.BGIv1.0 annot-version=v1.0 MAITRFFTLASTVQTSSYRRLLTPQIHHTFPFCRKDPPPAAKKVPSAVTAHGQTWQDPYQWMRNTSNQDFLATSARRTPTLPISFRRPTSCGGLSSGKCG VGFRRNRPLLNVRETERKEHPVLCRRSEESNEYGIVKKLLSKEQIVLDWNEIADQYGTKASLFAFCEKLLHLTVGFTGLILKQCDIEDLNPVPTNLCSIT PGSNYVFSSSVYRLVLPSHVMPDAFADYDMSKTTFSIVYHEEGWKDLSRDHCWEQKQGVSHDGVEIPLTILFSRKAWRKGQSPGLLDGYGAYGLPLDKSW SSDRLNLLDRGWVIAFADVRGGGRGWGDEGGSNSSWHESGTKLAKPNSIHDFVSCGSFLVDEGYVHSKKLAAEGASAGGLLVAAAINMKTDLFRAAILKV PFLDVCNSMMDPSLPLTEFGYEEYGNPQIESKFECIRNYSPYDNIQRGTCQPAMLVTASYNDSRVGVRDVTCPSCSRSVVHKTNMNAGHSGEGGLYSGCE ETAYEYAFLLAKKRKNVRIRPTYNNLGKTTSYINKMKRIIQSSEEDSDNRSTVGGGESGESSSSSSRCRSVSHGMVSVIGRKRAMDDAVAVVPGLEIGGL DNYFDFFAVYEGRGFGSAVSASCRKRMHLLVAMEAEKKMIGVKGTDQMVMWKELMVNSFLEMDREIRSVDHQQPEYEAAGDEEDEENAEADKSTAVVVML GKEEIVVANSGDCKAVLSRGGASLPLSTGNRTDLPEEHRITGGKVATTASKATGDDSDRRRVISEPEVTVTERSESDELVVIASEGMWDVVPNDAACAVA AKCFDSGRRMGFADETSENCAAGAAVFLAELAMARGSRENISVIVVKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69020			Prolyl oligopeptidase family p...		Lus10032378 [exp]	0	1
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	5.0	0.8318
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	6.2	0.8439
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Lus10010561 [exp]	6.5	0.7872
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	6.6	0.8088
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	9.0	0.8132
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	9.4	0.8387
					Lus10033476 [exp]	9.6	0.8370
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	9.6	0.8323
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	10.5	0.8099
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	11.2	0.8231

Compare expression of checked genes

Lus10032378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.