Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23850 1021 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 976 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G64400 967 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 738 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT2G47240 659 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 439 / 3e-144 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 427 / 1e-139 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G04350 327 / 4e-101 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 305 / 6e-93 LACS9 long chain acyl-CoA synthetase 9 (.1) AT3G23790 168 / 1e-43 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023089 [exp] 1157 / 0 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10001830 [exp] 1018 / 0 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 756 / 0 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10021021 [exp] 748 / 0 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032840 [exp] 638 / 0 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 610 / 0 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 452 / 2e-149 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 450 / 2e-148 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 431 / 6e-141 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139700 [exp] 1083 / 0 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 1083 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 771 / 0 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 622 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.010G090200 [exp] 452 / 2e-149 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 443 / 8e-146 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.005G177500 [exp] 322 / 1e-99 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 321 / 7e-99 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 310 / 8e-95 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 298 / 1e-91 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10032380 pacid=23168678 polypeptide=Lus10032380 locus=Lus10032380.g ID=Lus10032380.BGIv1.0 annot-version=v1.0 ATGTCGCAGATGAAGTATCTGATCGAGGTTGAGAAAGGTCAGCCGGGGAAGGATGGAAAGCCGTCGATCGGGCCTGCTTACCGCAGTGTGTTTGCTAAGG ATGGATTTCCTCCTCCTATTCCCGGTCTGGACTGCTGCTGGGATGTTTTCCGGCTGAGCGTGGAGAAGTATCCAAACAATCCGATGCTCGGCCACCGGGA GATTGTAGACGGCAAGGCCGGGAAATATGTGTGGCAGACGTACAAGGAAGTCTACAACATTGTTATCAAAGTTGGAAATGCTATTCGCAGCTGTGGTGTT GAAGCGGGAGCAAAATGTGGTATATTTGGCGCCAATTGCTCACAATGGATTGTCAGCATGGAGGCTTGCAATGCTCATGGACTGTACTGTGTCCCTTTAT ATGATACCTTAGGTGCTGGCGCTGTGGAATATATTTTATGTCATTCAGAGATTTCAATTGCTTTTGCTGAGGAGAAAAAGATTCCCGAGCTATTGAAAAC GTTCCCAAATGCAACACAGTATTTGAAAACTGTTGTGAGCTTTGGTAAGGTAACTCCTGAGCAGAGACAGGAAATGGAAAAGTTTGGCCTGTCAGTCTAT TCGTGGGAAGAATTTATCAAACTGGGGGAGAACAAAGAATACGATTTCCCAGAGAAGAAAAAAAGTGACATATGTACAATTATGTATACTAGTGGAACAA CTGGTGATCCCAAGGGTGTCATGATTTCAAATAATAATATCATGACTCTTATAGCTGGGGTGAAACGGGTACTAGAGTCTGTGAATGAATCGCTGACTAC AAAGGACGTGTACCTGTCATACCTTCCTCTTGCTCATATCTTTGATCGAGTGATCGAGGAATTATTTATTTTTCATGGTGCCTCTATAGGGTTCTGGAGA GGGGACGTCAAATTGTTGGTTGAAGACATTGGGGTGTTAAAACCATCTATTTTCTGTGCTGTTCCCCGTGTGTTGGACAGGATATATGGAGGCTTGACTC AGAAGATCTCTGCTGGTGGACTTCTGAAAAAAACTTTGTTCAATTTTGCTTACTCTCACAAACTGAGTAATTTGAAAGGGGGAAGTAAGACGGACGAGGC ATCTCCACTCAGCGACAAATTTGTCTTTAGCAAGGTCAAGCAAGGGTTGGGAGGCAATGTACGGCTGATATTATCTGGAGCTGCACCTCTCGCCAGCCAC GTCGAAGCTTATCTTCGAGTCGTCACATGTGCCCATGTTTTACAAGGATATGGTCTCACGGAGACTTGTGCTGGAAGTTTCGTCTCATTGCCAAATGACA TGTCAATGCTTGGCACTGTTGGCCCTCCAACTCCAAACATTGATGTCCGCCTTGAATCAGTTCCTGAAATGAACTACGATGCTCTTTCGAGCACACCTCG TGGAGAAATCTGCATCCGTGGGGAGACCCTATTTTCCGGCTACTATAAACGTGAAGATCTCACCGAGGAAGTCCTGATAGATGGCTGGTTCCACACAGGG GATGTTGGGGAATGGCAGCCCGATGGAAGCATGAAAATCATTGATCGCAAGAAGAACATCTTCAAGCTCTCACAAGGAGAGTATGTTGCCGTGGAAAACC TGGAGAACATCTACGGTAGTACACCTGGCATTGATTCGATTTGGGTGTACGGGAACAGCTTCGAGTCGTTCCTCGTTGGGGTAGTGAACCCGAACCAGCC AGCACTCGAGAAATGGGCTCAAGAGAATGGTATTAGCGAGGACTTCCGCACCCTCTGCGAGAACCCAAAGGCCAAAGAACACATCCTCCAAGAACTGACC AAGATTGGAAAAGAGAAGAAGTTGAAAGGCTTCGAGCTCCTGAAAGGTGTTCATCTTGAACCCGAGCCTTTTGACATGGAACGCGACCTCCTCACTCCAA CATACAAGAAGAAGAGACCCCAACTCCTCAAATATTACCAGGTCATCCTCTCTCTCCGATCACATTCATTCTCTTTTCAACCGGTATCGTTTTACCGTCT CGTTCGAGTCTTTAACCCAAAGTTTTCGTTTAATCTGTTTGTTCTCGATTGCAGAATGTTATTGACAACCTGTACAAGAGCGTCAACAGCAAGTGCAGTG CACATTGGAAGTAAAAGGGGACTGGAGAAGCTTTTTAAAACCTTTCTGTCTTCTCTGCTCTGCTTCTGTGTTATTTATTTCCTTGAAAACGTTCTGATGT GGACTGTGTACATAGCTATTTATAAAAAAAAAAGCACTCTATAA
AA sequence Show only first row Show all	>Lus10032380 pacid=23168678 polypeptide=Lus10032380 locus=Lus10032380.g ID=Lus10032380.BGIv1.0 annot-version=v1.0 MSQMKYLIEVEKGQPGKDGKPSIGPAYRSVFAKDGFPPPIPGLDCCWDVFRLSVEKYPNNPMLGHREIVDGKAGKYVWQTYKEVYNIVIKVGNAIRSCGV EAGAKCGIFGANCSQWIVSMEACNAHGLYCVPLYDTLGAGAVEYILCHSEISIAFAEEKKIPELLKTFPNATQYLKTVVSFGKVTPEQRQEMEKFGLSVY SWEEFIKLGENKEYDFPEKKKSDICTIMYTSGTTGDPKGVMISNNNIMTLIAGVKRVLESVNESLTTKDVYLSYLPLAHIFDRVIEELFIFHGASIGFWR GDVKLLVEDIGVLKPSIFCAVPRVLDRIYGGLTQKISAGGLLKKTLFNFAYSHKLSNLKGGSKTDEASPLSDKFVFSKVKQGLGGNVRLILSGAAPLASH VEAYLRVVTCAHVLQGYGLTETCAGSFVSLPNDMSMLGTVGPPTPNIDVRLESVPEMNYDALSSTPRGEICIRGETLFSGYYKREDLTEEVLIDGWFHTG DVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGSTPGIDSIWVYGNSFESFLVGVVNPNQPALEKWAQENGISEDFRTLCENPKAKEHILQELT KIGKEKKLKGFELLKGVHLEPEPFDMERDLLTPTYKKKRPQLLKYYQVILSLRSHSFSFQPVSFYRLVRVFNPKFSFNLFVLDCRMLLTTCTRASTASAV HIGSKRGLEKLFKTFLSSLLCFCVIYFLENVLMWTVYIAIYKKKSTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Lus10032380 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041685 [exp]	4.7	0.8562
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	20.1	0.8103
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	22.7	0.8099
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10034106 [exp]	26.8	0.8200
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	28.8	0.8313
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	35.7	0.8386
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	40.6	0.8378
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	80.2	0.7909
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10016717 [exp]	91.8	0.8003
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10036744 [exp]	108.2	0.8044

Compare expression of checked genes

Lus10032380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.