Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62050 253 / 1e-80 ATOXA1, OXA1AT, OXA1 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) AT2G46470 210 / 6e-64 OXA1L inner membrane protein OXA1-like (.1) AT4G33355 66 / 3e-13 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT2G18370 62 / 6e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT5G59320 59 / 1e-10 LTP3 lipid transfer protein 3 (.1) AT2G15050 58 / 2e-10 LTP7, LTP lipid transfer protein 7, lipid transfer protein (.1.2.3) AT2G38530 54 / 4e-09 cdf3, LP2, LTP2 cell growth defect factor-3, lipid transfer protein 2 (.1) AT5G59310 53 / 9e-09 LTP4 lipid transfer protein 4 (.1) AT5G01870 47 / 1e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G51590 47 / 1e-06 LTP12 lipid transfer protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023088 [exp] 419 / 4e-145 AT5G62050 412 / 6e-142 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001427 [exp] 258 / 5e-82 AT5G62050 387 / 4e-132 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001639 [exp] 255 / 3e-81 AT5G62050 382 / 3e-130 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10023087 [exp] 206 / 3e-66 AT4G33355 69 / 8e-16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10003884 [exp] 135 / 2e-38 AT4G33355 72 / 6e-17 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10001829 [exp] 128 / 4e-36 AT4G33355 81 / 1e-20 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10015279 [exp] 71 / 1e-14 AT5G59320 116 / 6e-35 lipid transfer protein 3 (.1) Lus10007280 [exp] 70 / 2e-14 AT5G59310 90 / 2e-24 lipid transfer protein 4 (.1) Lus10014167 [exp] 68 / 1e-13 AT5G59310 102 / 2e-29 lipid transfer protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091800 [exp] 285 / 1e-92 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.018G140100 [exp] 269 / 8e-87 AT5G62050 365 / 8e-124 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.006G073000 [exp] 259 / 1e-82 AT5G62050 373 / 1e-126 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.004G086600 [exp] 66 / 4e-13 AT2G38540 122 / 3e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.004G086500 [exp] 66 / 6e-13 AT2G38540 124 / 5e-38 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.014G046500 [exp] 65 / 6e-13 AT4G33355 76 / 6e-19 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.001G232700 [exp] 57 / 4e-10 AT2G18370 93 / 1e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232900 [exp] 57 / 5e-10 AT2G18370 100 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.014G098000 [exp] 56 / 2e-09 AT5G59310 71 / 9e-17 lipid transfer protein 4 (.1) Potri.006G108100 [exp] 50 / 9e-08 AT2G38540 121 / 6e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [flax] [poplar] Oxa1 PF02096 [flax] [poplar] 60KD_IMP 60Kd inner membrane protein CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10032381 pacid=23168535 polypeptide=Lus10032381 locus=Lus10032381.g ID=Lus10032381.BGIv1.0 annot-version=v1.0 ATGGCATCTGTTTTCCTAGCCATTTTTCTCATCGCTAACGGGGTGGCTGCTCAGTCGCCGAAGTTAGCTCCTCCGTCCTGTTCCGTGGTCTACGACGACT TGCAGCCGTGCATTCCTTATCTCTCTGGCACTGGCGGGCAAGCAGCTGCAGGGGTGGGTGAACCGACGAAGGAATGCTGCAGCGGAGTGAAGGCGCTGCA GCCGTACTCAGAGTCGAAATTGGATCGAGTTGCGTTGTGCCAGTGCTTCAAGTCGTTGGTTGGTTCAGTGCCTGGGATTGATCTGTCCGTTGCGTCTAAT CTTCCGGACAAGTGTAACGTCAATGTCCACCTGCCTAAGCTCTCTCTCGACTTCGACTGTTCCAAGTTTATTTCCATTGGTATAGCAACTCTTCTCATTA GAACAGCAACGATTCCCCTCCTCATCAATCAACTCAAAGCAACCACAAAGCTTTCACTTTTGAGGCCACGTCTGGAGAAGATTCAGCAAGATATTCGAGA TAAGGGCATGGAGCCAGAGTCTGTTTATGCGGGCCAAATGGAAATGAAGAAGCTTTTTGCAGAATATGGTGTTACCCCATTTACTCCATTGAAGGGAATT TTTATTCAGGGTCCTGTGTTCGTTTGCTTTTTCCTTGCAACTGACAATGTGCAAAAATTCCAGATCTCTAACATGGTGGAAAAAGTGCCATCCTTTAAAA ATGGTGGAGCATTCTGGTTTACTGACCTGTCTACTCCTGACAGTATGTACTTACTTCCGGTTTTGACTGGATTGAGTATTTTGATAACAGTTGAGACTAA TATGCAAGAAGGTTTGGAGGGTAATCCTATTGCTGGCACCATGAAAACGATCTCGAGAGTCTTTGCTGTGGCTGCTGTTCCATTAACCGCTTCCTTCCCT ACGGTTCCCGGTGTAAAGAAATCCTTGGGCGTTCCCGACATACCCGTGACACCATCAACTGCTTCAACTGGACAGGCTTCGTTCAATCTGTTTCCAGCTT TCAAACCGAATCCAGTAGTTGTGGAAGAAGCGTCATCGTCTGTGCCAAATGACGAATCGTCGGTGAAAAAACCTAGCCGGAGAGCTTCATCTTCTGCGAT CCTTAGCCAGAGACTTCGGAGTCTAGAGAAGCAAGTGAAGGAGCGGAAGAAAAACAAGAAGTAG
AA sequence Show only first row Show all	>Lus10032381 pacid=23168535 polypeptide=Lus10032381 locus=Lus10032381.g ID=Lus10032381.BGIv1.0 annot-version=v1.0 MASVFLAIFLIANGVAAQSPKLAPPSCSVVYDDLQPCIPYLSGTGGQAAAGVGEPTKECCSGVKALQPYSESKLDRVALCQCFKSLVGSVPGIDLSVASN LPDKCNVNVHLPKLSLDFDCSKFISIGIATLLIRTATIPLLINQLKATTKLSLLRPRLEKIQQDIRDKGMEPESVYAGQMEMKKLFAEYGVTPFTPLKGI FIQGPVFVCFFLATDNVQKFQISNMVEKVPSFKNGGAFWFTDLSTPDSMYLLPVLTGLSILITVETNMQEGLEGNPIAGTMKTISRVFAVAAVPLTASFP TVPGVKKSLGVPDIPVTPSTASTGQASFNLFPAFKPNPVVVEEASSSVPNDESSVKKPSRRASSSAILSQRLRSLEKQVKERKKNKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10032381 [exp]	0	1
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	1.4	0.8789
AT2G20390			unknown protein		Lus10022869 [exp]	3.0	0.8363
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	3.5	0.8658
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	8.0	0.8215
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	8.9	0.8683
AT4G11630			Ribosomal protein L19 family p...		Lus10017958 [exp]	8.9	0.8615
AT3G12150			unknown protein		Lus10035501 [exp]	12.0	0.8429
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Lus10006181 [exp]	14.5	0.8239
AT4G31985			Ribosomal protein L39 family p...		Lus10019065 [exp]	15.3	0.7908
AT3G16080			Zinc-binding ribosomal protein...		Lus10035878 [exp]	15.3	0.8465

Compare expression of checked genes

Lus10032381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.