Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 210 / 4e-64 RING/U-box superfamily protein (.1) AT2G46495 166 / 1e-47 RING/U-box superfamily protein (.1) AT2G46494 165 / 3e-47 RING/U-box superfamily protein (.1) AT2G25410 150 / 1e-41 RING/U-box superfamily protein (.1) AT1G28040 142 / 5e-39 RING/U-box superfamily protein (.1) AT5G07040 114 / 5e-30 RING/U-box superfamily protein (.1) AT2G46493 105 / 8e-27 RING/U-box superfamily protein (.1) AT2G25409 104 / 1e-26 unknown protein AT2G46160 86 / 2e-19 RING/U-box superfamily protein (.1) AT2G35910 84 / 2e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019018 [exp] 203 / 2e-61 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10012628 [exp] 174 / 2e-50 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10003400 [exp] 118 / 7e-32 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10005389 [exp] 104 / 1e-26 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10024124 [exp] 103 / 7e-26 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1) Lus10003401 [exp] 96 / 5e-22 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10036466 [exp] 77 / 4e-15 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041079 [exp] 74 / 4e-15 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10010124 [exp] 71 / 7e-15 AT2G25409 86 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091700 [exp] 287 / 3e-94 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 281 / 7e-92 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 228 / 4e-71 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 212 / 5e-65 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 195 / 1e-58 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 195 / 2e-58 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.003G192700 [exp] 122 / 4e-33 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.001G032300 [exp] 116 / 1e-30 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.010G243500 [exp] 88 / 2e-20 AT5G06490 113 / 6e-32 RING/U-box superfamily protein (.1) Potri.010G243200 [exp] 87 / 4e-20 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10032382 pacid=23168607 polypeptide=Lus10032382 locus=Lus10032382.g ID=Lus10032382.BGIv1.0 annot-version=v1.0 ATGCCTCTTTCTCCAACCACCCTCTTCTTCCTCCTCATCCATCTCTCCTCCGCCGCCGCCGGCTCCTGCGGCGGATCATGCCGCCTAGGCGCCCCCAACG TCCGCTTCGCCTTCGGCCTCAGCAGCCGCTCCGGTGGAGGCAAGCTGGTTAACAACAACAACAACACCAACCAACGATGCAGCTTCCCAGGGTTCTCCCT CACGTGCGACGGTGAGGGGCAGACCACGATCGCCCTCGGAAACTCGGGTGAATTCGTCGTCCAGTACATCGAGTACCACAGCCAGGTAGCGTACATCCGA GACCCGGGGGATTGCCTGCCCAGAAGGTACCTGGATTCCTTCTCCCTGGAAGGCACGCCGTTTATTCCAGAGTCAACAGGGATTTTCACTTTCCTTAACT GCTCCGATATGTCCGGGTCCGGGTCGAGCGCTGTGCCCGGGTCGAGACGAGTCGGGTGCTTGAGCGGGGAAGGGTTTACGGTCCGGGCGATGCGGACGAG TGCTTTCAGGGGGATGAATTTGACCGCGGACGCGCCGTTGTGTGGCTTGGTGTCTACGGACGTGAGGATTCCGGTAAGTTGGCCGCGGTGGTCGGATGCT GATACGAGGTTGGTTTGGAGCATGCCGGATTGCTTGCCGTGCGAGGAGGACGGTAGGATTTGCGAGTTTACGGGCGGGAATGGGTTGGATATCGGGTGCT CCGAACCGGACAGGAAAACTGAAGGTCTTTCAAAGAGGGCCAAATACGGGCTGGTCCTAGGCGTGGGAATCCCGGGCCTAATATCCGCAATCGGCCTCTG CTGCTTCGTATGCGGCAAAATCGGTACCCGACGAAACGCCAGCAGCAGCAGAAGCTTCCACACCGCCGCCACAGCCCGCCACCACCCGCCTGTTTCCTAC GTCTTGTCGGGACTCGACGAGCCGACCATCCAATCTTACCCGAAAACCCTCCTAGGGGAGAGCCGGCGGCTTCCGAAGCCGGCCGACAACACTTGTCCCA TCTGTCTGTCGGAGTACGAGCCGAAAGAGACGCTGCGGACGATTCCAGAGTGCAACCATTACTTCCACGCGGAGTGCATCGACGAGTGGCTGAAAATGAA CGCCACGTGCCCGCTGTGCCGGAACACGCCGGAGTCGTCAGTGGCCAGCACGCCTTCCCCTTCGTTTATGTCCTCCTCTACGTCGTCCTCTGGGCTCTCA ACTCCGTAG
AA sequence Show only first row Show all	>Lus10032382 pacid=23168607 polypeptide=Lus10032382 locus=Lus10032382.g ID=Lus10032382.BGIv1.0 annot-version=v1.0 MPLSPTTLFFLLIHLSSAAAGSCGGSCRLGAPNVRFAFGLSSRSGGGKLVNNNNNTNQRCSFPGFSLTCDGEGQTTIALGNSGEFVVQYIEYHSQVAYIR DPGDCLPRRYLDSFSLEGTPFIPESTGIFTFLNCSDMSGSGSSAVPGSRRVGCLSGEGFTVRAMRTSAFRGMNLTADAPLCGLVSTDVRIPVSWPRWSDA DTRLVWSMPDCLPCEEDGRICEFTGGNGLDIGCSEPDRKTEGLSKRAKYGLVLGVGIPGLISAIGLCCFVCGKIGTRRNASSSRSFHTAATARHHPPVSY VLSGLDEPTIQSYPKTLLGESRRLPKPADNTCPICLSEYEPKETLRTIPECNHYFHAECIDEWLKMNATCPLCRNTPESSVASTPSPSFMSSSTSSSGLS TP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10032382 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10015018 [exp]	3.0	0.9654
					Lus10043397 [exp]	3.7	0.9568
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	5.5	0.9572
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	5.7	0.9650
AT2G14095			unknown protein		Lus10025500 [exp]	6.9	0.9480
AT4G32480			Protein of unknown function (D...		Lus10033683 [exp]	7.3	0.9460
AT5G36930			Disease resistance protein (TI...		Lus10007821 [exp]	7.5	0.9603
					Lus10006284 [exp]	8.7	0.9507
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	10.4	0.9597
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	13.0	0.9543

Compare expression of checked genes

Lus10032382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.