Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23860 409 / 1e-140 PHD finger protein-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023084 [exp] 726 / 0 AT4G23860 483 / 1e-169 PHD finger protein-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140000 [exp] 526 / 0 AT4G23860 460 / 1e-160 PHD finger protein-related (.1.2.3) Potri.001G091600 [exp] 513 / 0 AT4G23860 444 / 4e-154 PHD finger protein-related (.1.2.3) Potri.017G101100 [exp] 43 / 0.0006 AT3G02260 6576 / 0.0 UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02207 [flax] [poplar] zf-UBR Putative zinc finger in N-recognin (UBR box)
Representative CDS sequence Show only first row Show all	>Lus10032384 pacid=23168625 polypeptide=Lus10032384 locus=Lus10032384.g ID=Lus10032384.BGIv1.0 annot-version=v1.0 ATGGCGGACGTATTTGATGATGAGACTGAGCAGACCGTGACCATGGACGAGTATCTAAAGGGGGTCGAAGCTGAGGAGTTGGAAGCTGATCTGGTATTGG GTGGAGATGAGGGCAAGGACTGCACTTATAACTTGGGTTATGTGAAGAGGCAGGCAATTTTTTCATGTTTGACTTGTACTCCTGAAGGGAATGCTGGAGT TTGCACAGCTTGCACCTTGTCTTGCCATGACGGCCATGAGATTGTTGAATTATGGACCAAAAGAAATTTCCGATGTGATTGTGGTAATTCCAAGTTCGGA GAGTTCTTCTGCAAGCTTTGCCCTAACAAAGATGTCGAGAATGTCGAGAATTCATATAATCACAACTTTAAAGGTCTCTACTGCACTTGTGGCGGCCCCT ATCCTGATCCAGATGCTGAAGTACAAGAGGATATGATACAGTGTATATTATGCGAGGATTGGTTTCACGAGGAGCATTTGGGTCTGGAGTCTGTAAATGA GATCCCTAAAGACAGTGATGGAGAGCCTCTGTATGATGAATTCATATGCAAAGCGTGTTCAACATTTTGTTCATTTCTGACACTGTATTCCCAGACAATC CGAGCTTTAGAATGTCATGCTGGCGACTACGCTTCTAATACTAACAAAGATAAAGGTGTAATGGAAAGCCATCCTTCCCCGGCTCTGAATGAGAAAGTTG ACAACAATGCTGGTTCTGGTCCATCTAGAAATGGTGGCGAAATGGTTAGTCCAAAAGATGTTCCCATGGAGAGGGGATCTTCGAGCAATAAAAGTCTTGA GAAGAATGATTGTTCAGATGCATGCGCTGATGAGCAGAATGTTAATTCTGTTTGTGTTGTGGGAAATAACACAGAAGTATCTCCTACTGTGGATATTAAA CCGTTCTTTCTTGCCAAAAACTGGAGGGCACTCCTGTGCAGATGTGAAAAATGCTTGGAGTTGTACAAACAGAAGCATGTAAGCTACCTTATTGATAAGG AGGACTCCATTGCTGAGTATGAGATGATGGCAAAGCAGAAGAGAGAAGAGAAGTTGCAGAAACAAGAAGGCGATGAGATGGATCTCTTAAACAAACTTGG TCATGTAGAGAAGATGGAGATACTCAATGGCATTGCTGATTTTAAGGATGAGTTCCGTTCATTTATGGAGTCATTTGATCCATCAAAGACTGTAACATCA ACTGATGTACAGCAGATCTTCAAGAATCTGGCAAAGAAACGCAGACGTATGTAG
AA sequence Show only first row Show all	>Lus10032384 pacid=23168625 polypeptide=Lus10032384 locus=Lus10032384.g ID=Lus10032384.BGIv1.0 annot-version=v1.0 MADVFDDETEQTVTMDEYLKGVEAEELEADLVLGGDEGKDCTYNLGYVKRQAIFSCLTCTPEGNAGVCTACTLSCHDGHEIVELWTKRNFRCDCGNSKFG EFFCKLCPNKDVENVENSYNHNFKGLYCTCGGPYPDPDAEVQEDMIQCILCEDWFHEEHLGLESVNEIPKDSDGEPLYDEFICKACSTFCSFLTLYSQTI RALECHAGDYASNTNKDKGVMESHPSPALNEKVDNNAGSGPSRNGGEMVSPKDVPMERGSSSNKSLEKNDCSDACADEQNVNSVCVVGNNTEVSPTVDIK PFFLAKNWRALLCRCEKCLELYKQKHVSYLIDKEDSIAEYEMMAKQKREEKLQKQEGDEMDLLNKLGHVEKMEILNGIADFKDEFRSFMESFDPSKTVTS TDVQQIFKNLAKKRRRM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23860			PHD finger protein-related (.1...		Lus10032384 [exp]	0	1
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	22.4	0.7277
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10028170 [exp]	28.5	0.7031
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	31.0	0.7092
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	35.9	0.7160
AT4G31520			SDA1 family protein (.1)		Lus10028318 [exp]	46.1	0.7155
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	53.4	0.7018
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10001091 [exp]	54.0	0.6799
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	66.1	0.7046
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	70.5	0.6998
AT1G61000			unknown protein		Lus10012690 [exp]	75.2	0.7026

Compare expression of checked genes

Lus10032384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.