Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023083 [exp] 142 / 4e-44 ND 36 / 0.005 Lus10023082 [exp] 112 / 9e-33 ND / Lus10001828 [exp] 65 / 2e-14 ND 35 / 0.003 Lus10003883 [exp] 64 / 8e-14 ND / Lus10003882 [exp] 49 / 6e-08 ND 35 / 0.004
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140100 [exp] 49 / 4e-08 AT1G64405 42 / 5e-06 unknown protein Potri.001G091500 [exp] 45 / 1e-06 AT1G64405 42 / 5e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032385 pacid=23168546 polypeptide=Lus10032385 locus=Lus10032385.g ID=Lus10032385.BGIv1.0 annot-version=v1.0 ATGGGAAATTGCTTACAAAGAAACAAACTAAGGAGCCAAGTGCACCAAGTGGCTGAAGAAGAAGACAGTAGTACTATCATCAGCAAGCATTCATGCGACT ACTTGAAGGAGGAGAAGGAAGAAGACATTAATGTTAAGCCGGCGGCTGTTAATGGGAAGAAAGTGAAGATAGTACTGAGCAAGGAGGAGCTGGACTGGCT GATGTTGGAGCTCAACAGCGGAGGAGGAGGATCTGCGAAGAATATTGGAGATGCTCTGTCCCAGATCCAAAGAAGCAGAGGATCACCTCTCAAACCACTT AATGTTGTTTTCGATTTCGACGACGAGGATGAGGATTATGAGGATGATGATGACAGTAGTAATTGCTGGCGGCCTTCTTTGGAGACCATTTCTGAGCTCC CTGAAGAAGAAGAAGAATCTGAGAGATCGTGA
AA sequence Show only first row Show all	>Lus10032385 pacid=23168546 polypeptide=Lus10032385 locus=Lus10032385.g ID=Lus10032385.BGIv1.0 annot-version=v1.0 MGNCLQRNKLRSQVHQVAEEEDSSTIISKHSCDYLKEEKEEDINVKPAAVNGKKVKIVLSKEELDWLMLELNSGGGGSAKNIGDALSQIQRSRGSPLKPL NVVFDFDDEDEDYEDDDDSSNCWRPSLETISELPEEEEESERS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032385 [exp]	0	1
AT1G80520			Sterile alpha motif (SAM) doma...		Lus10024059 [exp]	1.0	0.8774
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10011335 [exp]	4.0	0.8248
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	4.2	0.7906
AT5G05180			unknown protein		Lus10029012 [exp]	5.8	0.8528
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	7.5	0.7546
					Lus10005747 [exp]	8.8	0.8264
					Lus10028987 [exp]	11.1	0.7409
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	11.2	0.8238
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	13.3	0.7917
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10020700 [exp]	13.5	0.7959

Compare expression of checked genes

Lus10032385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.