Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23895 276 / 5e-94 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023081 [exp] 451 / 1e-162 AT4G23895 308 / 2e-106 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140500 [exp] 281 / 6e-96 AT4G23895 284 / 3e-97 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) Potri.001G091100 [exp] 276 / 6e-94 AT4G23895 313 / 1e-108 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10032387 pacid=23168571 polypeptide=Lus10032387 locus=Lus10032387.g ID=Lus10032387.BGIv1.0 annot-version=v1.0 ATGGATGATCGTCGAGGGAAGCTGAACATTGTCCCGGATCACTTTCAAGTTTCGACAGCCAGTGAGGAGGAGGATAGTCCAAACCTAGAAACTACACCTG CTTCGCAATCGAAAGTTGACAATTCGCCTAGGCCCCAAAGCCTTTCCTGGTCAGCAAGAAAATTCAGGACTGCTGCATCTATGTTGAGAATGTTCAGTCT GCGTGGTCTACCTTGGAGCCCTGACGGTCAGGAAAAGGTTCAGATAACTATGGGAGAACTGGAATCACTTCGGTCGGAGCTTTCTGAGTTGGAAGAAAGG GAATCTTACTTAAAAGCTCAGTTGGAACATGTCGATGAAATTCTGCGCTCAGCTCGCCTCTCTGGCTATTTATTCATTCGATCTAGATGGGCAGCTTTAC CAGGCGAACCTCCAGTACTCGAAGACAGTGATATTGATGATTGGCTTCCTCGCTTTGTTGTCCTTCATGGACTATGCTTGTTCTTCTATTTGTTAAGCAC AGATTTGAGTCCTCAAGATTCCACTCTGTTATCCGATGTTGTGGAAGTGGGTTCTCTGCCAGATTCCATTCGGGAACATGATGAAACCCGATATGCCTTC TATGTCTTAACTTGTCAAGGCCTTCGGTATGAATGCTGTAGCGCTTCCAAAGTGCAGGTGAACACATGGTTAGAGGCATTACAAACTGATTGCAGATTTG GTTGTGGTACAACAGAAGCTGCAAATGATGCTTCACCGGAGACCAAGAACCTTTCGTCGTCTGATTGA
AA sequence Show only first row Show all	>Lus10032387 pacid=23168571 polypeptide=Lus10032387 locus=Lus10032387.g ID=Lus10032387.BGIv1.0 annot-version=v1.0 MDDRRGKLNIVPDHFQVSTASEEEDSPNLETTPASQSKVDNSPRPQSLSWSARKFRTAASMLRMFSLRGLPWSPDGQEKVQITMGELESLRSELSELEER ESYLKAQLEHVDEILRSARLSGYLFIRSRWAALPGEPPVLEDSDIDDWLPRFVVLHGLCLFFYLLSTDLSPQDSTLLSDVVEVGSLPDSIREHDETRYAF YVLTCQGLRYECCSASKVQVNTWLEALQTDCRFGCGTTEAANDASPETKNLSSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23895			Pleckstrin homology (PH) domai...		Lus10032387 [exp]	0	1
AT3G21530			DNAse I-like superfamily prote...		Lus10034003 [exp]	4.9	0.9276
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	5.6	0.9375
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Lus10035945 [exp]	12.2	0.9250
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	18.7	0.9268
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017705 [exp]	18.9	0.9149
AT5G11950		LOG8	LONELY GUY 8, Putative lysine ...		Lus10026131 [exp]	22.8	0.9210
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	24.2	0.9271
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	26.5	0.9227
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	27.6	0.9054
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10033396 [exp]	27.7	0.8886

Compare expression of checked genes

Lus10032387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.