Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22250 628 / 0 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G77670 177 / 3e-50 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G80360 126 / 7e-32 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28420 88 / 1e-18 Tyrosine transaminase family protein (.1.2) AT5G36160 87 / 2e-18 Tyrosine transaminase family protein (.1) AT5G53970 87 / 3e-18 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT2G24850 80 / 9e-16 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 78 / 3e-15 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G28410 76 / 1e-14 Tyrosine transaminase family protein (.1) AT5G51690 72 / 4e-13 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023080 [exp] 879 / 0 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10004089 [exp] 175 / 3e-49 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 172 / 8e-49 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 157 / 1e-42 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023117 [exp] 110 / 4e-26 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10033659 [exp] 110 / 4e-26 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 105 / 4e-24 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017934 [exp] 100 / 8e-23 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10039861 [exp] 99 / 3e-22 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079200 [exp] 716 / 0 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.007G088426 [exp] 712 / 0 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 175 / 3e-49 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 170 / 2e-47 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 159 / 5e-44 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 115 / 3e-28 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.017G014100 [exp] 104 / 3e-24 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 99 / 2e-22 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 97 / 1e-21 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 96 / 4e-21 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10032388 pacid=23168573 polypeptide=Lus10032388 locus=Lus10032388.g ID=Lus10032388.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTCTGCAAGGTTCCACACCTGCTGTTTCCCGTCATCTGGCTCCGAATCACCCTCCTGCTTCACATTTCTCTGGAAAATCCGTTTCCTTCG CTTCTCAGCCTCTTATTTTCAACCTCAAGTCAGCGGAGAGTACAAAGCTAGGACGTTTCTCCAGATCAAAAGTCATGGCTAAGCTTGATAGTACTTCTGA CCTTGTGGAATTGGACATCTCTTTGAGCCCCAGAGTGAATTCTGTAAAACCATCGAAAACCGTGGCCATAACAGATCAGGCAACTGCTCTTGCAGAAGCT GGTGTTCCTGTCATTAGGTTGGCTGCTGGAGAACCTGATTTTGATACACCAGCTGTGATAGCCGAGGCTGGGATCAATGCTATCCGTGAAGGTTATACAA GATATTCACCTAATGCCGGCACAATGGAGTTACGGAGTGCAATATGTAAGAAGCTCAAAGAAGAAAATGGTCTCTCTTATTCACCGGATCAAGTTCTAGT TAGCAATGGAGCCAAGCAGAGTATCATTCAAGCCGTGCTTGCAGTTTGTTCCCCTGGAGATGAGGTTGTGATTCCAGCACCATTTTGGGTTAGTTACCCA GAAATGGCAAGATTGGCTGATGCAACTCCTGTGGTTCTTCCAACCTCTATCTCTGAGAACTTTCTGTTGGATCCAAGGCTGCTTGAATCCAAACTTACCG ACAAGTCAAGACTATTGATACTTTGCTCTCCATCTAACCCGACAGGATCTGTTTATCCGAAAGAATTGCTTGAAGAGATTGCAAAAATTGTAGCAAAACA TCCTAGACTTCTGGTTCTGTCTGATGAAATATACGAGCACATAATATATAAACCTGCCAAGCATACAAGCTTTGCGTCTTTGCCCGGCATGTGGGAGAGG ACACTTACAGTAAATGGATTTTCAAAGGCTTTTGCCATGACTGGATGGAGACTCGGATATATTGCTGGACCTAAGCATTTTGTGTCTGCATGTAATAAGA TACAAAGCCAGTCGACTTCTGGTGCGAGCAGTATCTCGCAAAAGGCAGCAGTTGCTGCATTAGGACTAGGATATGCCGGTGGGGAAGCAGTGGCTACAAT GGTGAAAGCATTCAGGGAGCGTCGAGACTTCTTGGTCAAAAACTTCGGAGAGATACAAGGGGTGAAGATCTCTGAACCTCAGGGTGCATTCTATCTGTTC ATTGACTTCAGCTCATACTTTGGATCATCGGTTGAAGGCTTTGGTAAAATTGAGGACTCTGAGTCCCTTTGCAGATACCTGTTAGACAAAGCACAGGTTG CACTAGTCCCTGGGGTTGCGTTCGGAGATGACACGTGCATACGAATATCGTACGCCGCTTCCCTCGCAACATTAGAGGCGGCTGTAGAAAGGATTAAGAA GGCGATCGTAGCTCTGAAGCCTGTTGTTCCTGTTTGA
AA sequence Show only first row Show all	>Lus10032388 pacid=23168573 polypeptide=Lus10032388 locus=Lus10032388.g ID=Lus10032388.BGIv1.0 annot-version=v1.0 MAASLQGSTPAVSRHLAPNHPPASHFSGKSVSFASQPLIFNLKSAESTKLGRFSRSKVMAKLDSTSDLVELDISLSPRVNSVKPSKTVAITDQATALAEA GVPVIRLAAGEPDFDTPAVIAEAGINAIREGYTRYSPNAGTMELRSAICKKLKEENGLSYSPDQVLVSNGAKQSIIQAVLAVCSPGDEVVIPAPFWVSYP EMARLADATPVVLPTSISENFLLDPRLLESKLTDKSRLLILCSPSNPTGSVYPKELLEEIAKIVAKHPRLLVLSDEIYEHIIYKPAKHTSFASLPGMWER TLTVNGFSKAFAMTGWRLGYIAGPKHFVSACNKIQSQSTSGASSISQKAAVAALGLGYAGGEAVATMVKAFRERRDFLVKNFGEIQGVKISEPQGAFYLF IDFSSYFGSSVEGFGKIEDSESLCRYLLDKAQVALVPGVAFGDDTCIRISYAASLATLEAAVERIKKAIVALKPVVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	0	1
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	1.4	0.9483
AT5G13420			Aldolase-type TIM barrel famil...		Lus10032613 [exp]	2.4	0.9424
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	4.2	0.8995
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10029991 [exp]	4.9	0.8536
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	5.5	0.9225
AT1G18980			RmlC-like cupins superfamily p...		Lus10036658 [exp]	5.7	0.8946
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	6.0	0.9069
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	6.7	0.9044
AT2G42040			unknown protein		Lus10004164 [exp]	7.9	0.8390
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	10.1	0.8366

Compare expression of checked genes

Lus10032388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.