Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64670 306 / 2e-104 Ribosomal protein L18e/L15 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023078 [exp] 385 / 3e-135 AT5G64670 369 / 3e-129 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10031417 [exp] 44 / 5e-05 AT3G25920 246 / 3e-83 ribosomal protein L15 (.1) Lus10010916 [exp] 44 / 9e-05 AT3G25920 321 / 4e-111 ribosomal protein L15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G324300 [exp] 322 / 6e-111 AT5G64670 323 / 1e-111 Ribosomal protein L18e/L15 superfamily protein (.1) Potri.016G002400 [exp] 320 / 4e-110 AT5G64670 315 / 1e-108 Ribosomal protein L18e/L15 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10032390 pacid=23168653 polypeptide=Lus10032390 locus=Lus10032390.g ID=Lus10032390.BGIv1.0 annot-version=v1.0 ATGATCGCGAGAAAGCGATTGTTGTCTTCTCTGTTCTCATCGAAATCCCTTATCAATCGGATAACCAACCACCCAAAAACCGCTGCCTCCACTCTCATCC CACTCCCGCCATTTCAATCCCTGCAACGCCCCGGCGGCGGCTATGGGGCATCTGGGTTGTTTCTCGGAAGTGTTCGAAACTACAGCTTGTTGGCGCTTAA TGATTTGAGGGACAACATACCAAGGAAGCTGAAGACCAGGAAAGGGCGTGGGATTGGGTCTGGCAAAGGAAAGACTGCTGGAAGAGGTCACAAAGGTCAG AAAGCTAGAGGGACTTATAAGTTTGGGTTCGAAGGTGGTCAGACTCCCTTGCGCCGCCGTCTTCCCAAGAGAGGATTTAAGAACCCCTTTAGCCTCACTT TCCAGCCAGTGGGGTTGGGAAAGATTGCAAGGCTTATAAATGCTGGGAAGATAGATTCTCATGAATTGATTACTATGAAAACACTCAAGGATACTGGGGC CATCGGAAAGCAGATAGAAGATGGAGTGAGACTGATGGGGCGTGGTCTTGAGCACATTCAGTGGCCTATCCATCTAGAGGTTTCGAGGGTGACAGTTAGA GCCAAGGCAGCAGTAGAAGCAATGGGAGGAACAGTGAGGCGGGTGCATTACAACAAGCTGGGATTCCGAGCACTACTGAAGCCAGAGTGGTTTGAGAAGA AAGGAAGGCTGCTGCCAAAGCCGGCTAGACCTCCTCCAAAGTTGAAGCACAAAGTCGATAGCATCGGCAGATTGCCAGCACCAACCAAACCGATCCCATT CTACATCGAAGAAGAGGAGCAAGCTGAAAATGTTGTTGGGGTTGAATCTCCTCCCCCGCTAATTAGTGTTTGA
AA sequence Show only first row Show all	>Lus10032390 pacid=23168653 polypeptide=Lus10032390 locus=Lus10032390.g ID=Lus10032390.BGIv1.0 annot-version=v1.0 MIARKRLLSSLFSSKSLINRITNHPKTAASTLIPLPPFQSLQRPGGGYGASGLFLGSVRNYSLLALNDLRDNIPRKLKTRKGRGIGSGKGKTAGRGHKGQ KARGTYKFGFEGGQTPLRRRLPKRGFKNPFSLTFQPVGLGKIARLINAGKIDSHELITMKTLKDTGAIGKQIEDGVRLMGRGLEHIQWPIHLEVSRVTVR AKAAVEAMGGTVRRVHYNKLGFRALLKPEWFEKKGRLLPKPARPPPKLKHKVDSIGRLPAPTKPIPFYIEEEEQAENVVGVESPPPLISV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	0	1
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	2.2	0.8808
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	2.8	0.9018
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	2.8	0.8874
AT3G51010			unknown protein		Lus10026320 [exp]	3.7	0.8632
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031121 [exp]	4.0	0.8841
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	6.9	0.8853
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	8.5	0.8736
AT5G09995			unknown protein		Lus10035858 [exp]	8.8	0.8242
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	8.9	0.8227
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	9.8	0.8489

Compare expression of checked genes

Lus10032390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.