Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12250 544 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT2G45310 541 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT1G02000 538 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 536 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT3G23820 513 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G30440 494 / 5e-174 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT1G12780 92 / 3e-20 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT4G23920 91 / 7e-20 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G63180 87 / 1e-18 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G30620 86 / 6e-18 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009288 [exp] 547 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 542 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 541 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 540 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10016640 [exp] 517 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10031127 [exp] 516 / 0 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10022552 [exp] 513 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10008893 [exp] 507 / 4e-179 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 502 / 5e-177 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114600 [exp] 577 / 0 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.002G146500 [exp] 540 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 540 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 532 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 528 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.012G128200 [exp] 520 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.006G178500 [exp] 475 / 2e-166 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.018G100400 [exp] 474 / 3e-166 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G116750 [exp] 154 / 2e-45 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 99 / 9e-23 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10032391 pacid=23168460 polypeptide=Lus10032391 locus=Lus10032391.g ID=Lus10032391.BGIv1.0 annot-version=v1.0 ATGGCCTCTTTGCTAATCGACAACAGTCCAACGTCAACACCGGGAAAATTCAAGCAGGACAAAGTGTCGCCGTACCTCCACCACCACCGCCACCGCTCCC TCCGCCTACAATCGAACATATCGAAGCTAACTTTTTACTCCTTCCTTTTCCTCATCCTCTTCCTCTTCCTTTTCCTCCTCTCCCCTTCCTCCTCCTCGGC TTCCCCTCGCCGCCACCTCACCTCGTCCGACCTCCCCGGCGGCCGTCACTGGGAGAAGAAGGTCCTTAAGTCTACCACCCCCAAATCCGCCGGCTGCTTC ACCGTCCTCGTCACCGGAGCCGCTGGCTTCGTCGGCACGCACGTCTCTGTCGCCCTCAAGCACCGCGGCGACGGCCTTGGCCTCGATAACTTCAACGCCT ACTACGACACCGATCTCAAGCTTTCCCGCCGCAAGGTCCTCGAGCGCACCGGAATATTCGTCGTCGAAGGAGACATCAACGACTCCGATCTGCTGAAGAA GCTCTTCGATGTCGTCTACTTCACGCACGTCATGCATTTAGCCGCTCAGGCAGGCGTACGGTACGCGATGCAAAACCCTAATTCCTATGTCCATAGCAAC ATCGCAGGGTTTGTAAGTTTGTTAGAGGTCTGTAAATCTGCGAATCCGCAGCCGGCGATCGTTTGGGCGTCCTCGAGCTCGGTCTACGGATTGAATTCGA AAGTTCCTTTCTCGGAGAAGGACAGGACTGATCGGCCGGCAAGTCTCTACGCCGCCACAAAGAAAGCCGGCGAGGAAATCGCTCATACATATAACCATAT CCATGGACTTTCGATCACCGGACTACGATTCTTCACTGTTTACGGACCTTGGGGACGGCCAGACATGGCCTACTTCTTCTTCACTAAGGATATGCTGGAA GGGAAAGAGATCAGCTTGTATCAAACTAGAGATGGGAGAAGTGTAGCCAGAGATTTCACCTACATTGATGACATCGTGAAAGGCTGTTTGGCTGCGATTG ATACGGCCAAGAAGAGTACAGGAAGTGGAGGGAAGAAGAAAGGTCCAGCTCAGTTGAGGATCTACAATCTGGGGAACACTTCCCCTGTTCCAATGACGAA GATGGTGAGCATTTTGGAGAAGCTTCTGAAAGTTAAAGCGAAGAAGAAAGCTCAGCCTTTACCTAGAAATGGAGATGTGCCCTTCACTCATGCTAATATC AGCTTGGCACATAAGGAGCTTGGGTATAAGCCGACTACTGATTTGGAATCAGGGCTTAAGAAGTTTGTAAGGTGGTACACTGATTACTACTCGAAGAACA AGAGTTCTTTCTCATTGTGA
AA sequence Show only first row Show all	>Lus10032391 pacid=23168460 polypeptide=Lus10032391 locus=Lus10032391.g ID=Lus10032391.BGIv1.0 annot-version=v1.0 MASLLIDNSPTSTPGKFKQDKVSPYLHHHRHRSLRLQSNISKLTFYSFLFLILFLFLFLLSPSSSSASPRRHLTSSDLPGGRHWEKKVLKSTTPKSAGCF TVLVTGAAGFVGTHVSVALKHRGDGLGLDNFNAYYDTDLKLSRRKVLERTGIFVVEGDINDSDLLKKLFDVVYFTHVMHLAAQAGVRYAMQNPNSYVHSN IAGFVSLLEVCKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDRPASLYAATKKAGEEIAHTYNHIHGLSITGLRFFTVYGPWGRPDMAYFFFTKDMLE GKEISLYQTRDGRSVARDFTYIDDIVKGCLAAIDTAKKSTGSGGKKKGPAQLRIYNLGNTSPVPMTKMVSILEKLLKVKAKKKAQPLPRNGDVPFTHANI SLAHKELGYKPTTDLESGLKKFVRWYTDYYSKNKSSFSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10032391 [exp]	0	1
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10016493 [exp]	1.0	0.9183
AT5G61350			Protein kinase superfamily pro...		Lus10021632 [exp]	2.0	0.8824
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Lus10014269 [exp]	3.9	0.8601
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	12.8	0.8460
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	15.7	0.8497
					Lus10038478 [exp]	20.2	0.8159
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	22.7	0.8373
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10018598 [exp]	23.0	0.8223
AT3G61320			Bestrophin-like protein (.1)		Lus10030389 [exp]	24.4	0.8357
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024062 [exp]	26.7	0.7000

Compare expression of checked genes

Lus10032391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.