Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11010 292 / 2e-101 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G23900 290 / 2e-100 Nucleoside diphosphate kinase family protein (.1) AT4G23895 287 / 3e-96 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT4G09320 187 / 6e-61 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT5G63310 183 / 2e-58 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT1G17410 85 / 7e-21 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001824 [exp] 300 / 2e-104 AT4G23900 377 / 4e-134 Nucleoside diphosphate kinase family protein (.1) Lus10003878 [exp] 299 / 8e-104 AT4G23900 362 / 6e-128 Nucleoside diphosphate kinase family protein (.1) Lus10024286 [exp] 190 / 2e-62 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1) Lus10003844 [exp] 186 / 1e-60 AT4G09320 264 / 7e-92 Nucleoside diphosphate kinase family protein (.1) Lus10014787 [exp] 184 / 9e-59 AT5G63310 301 / 2e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10017931 [exp] 184 / 9e-59 AT5G63310 301 / 3e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10023076 [exp] 154 / 5e-46 AT4G23900 189 / 4e-59 Nucleoside diphosphate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091001 [exp] 288 / 6e-100 AT4G23900 335 / 2e-117 Nucleoside diphosphate kinase family protein (.1) Potri.003G140600 [exp] 287 / 2e-99 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.014G049900 [exp] 192 / 4e-63 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1) Potri.012G093800 [exp] 192 / 5e-62 AT5G63310 281 / 1e-96 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Potri.002G138800 [exp] 186 / 7e-61 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.003G068100 [exp] 74 / 1e-16 AT1G17410 229 / 1e-77 Nucleoside diphosphate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [flax] [poplar] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10032392 pacid=23168604 polypeptide=Lus10032392 locus=Lus10032392.g ID=Lus10032392.BGIv1.0 annot-version=v1.0 ATGAGCTCTCACATCTTCAGATCTGCTTCCAGAGCCGCCAGGTCGCTTCTCTCCTCTGCCTCCAAGGGCTCTCGCTTCTACTCCGCTTACATGCTCCAAG AACAGGAGGCCCGTGCTGCAGAGCTCGAGCGCACCTTTATTGCTATCAAGCCCGATGGAGTCCAGAGAGGGCTGATTTCAGAAATCATTTCCCGATTCGA GCGCAAGGGATTCAAGCTCGTGGCAATCAAGGTTGTGGTTCCTTCAAAAGACTTTGCTCAAAAGCACTATCATGACTTGTCAGAGAGGCCATTCTTCAAC GGTCTTTGCGATTTCCTTAGCTCTGGTCCTGTTGTAGCCATGGTATGGGAAGGAGAAGGTGCGATTAAATACGGCAGGAAATTGATTGGAGCCACAGATC CTCAGAAATCCGAACCCGGAACTATCAGAGGTGACTTGGCTGTTGTTGTTGGAAGGAACATCATTCATGGAAGCGATGGCCCAGAAACCGCAAAGGATGA GATCAAGTTGTGGTTCAAGCCAGAGGAGTTGGTTACCTACACGAGCAATTCCGAGAAGTGGATCTATGAAAAAAATTGA
AA sequence Show only first row Show all	>Lus10032392 pacid=23168604 polypeptide=Lus10032392 locus=Lus10032392.g ID=Lus10032392.BGIv1.0 annot-version=v1.0 MSSHIFRSASRAARSLLSSASKGSRFYSAYMLQEQEARAAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKDFAQKHYHDLSERPFFN GLCDFLSSGPVVAMVWEGEGAIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVTYTSNSEKWIYEKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11010		NDPK3	nucleoside diphosphate kinase ...		Lus10032392 [exp]	0	1
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	4.6	0.9267
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	5.5	0.9358
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	6.3	0.9242
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	9.1	0.9302
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	12.4	0.9188
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	15.3	0.9017
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	17.0	0.9235
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	17.7	0.9231
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	19.9	0.9114
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10000117 [exp]	20.2	0.8897

Compare expression of checked genes

Lus10032392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.