Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10970 59 / 3e-10 unknown protein AT4G23910 44 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023075 [exp] 166 / 2e-50 AT4G10970 126 / 7e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090900 [exp] 83 / 7e-19 AT4G10970 127 / 8e-37 unknown protein Potri.003G140700 [exp] 79 / 2e-17 AT4G10970 127 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032393 pacid=23168560 polypeptide=Lus10032393 locus=Lus10032393.g ID=Lus10032393.BGIv1.0 annot-version=v1.0 ATGGCGGCCCTCAGACCACTCACTCGTGAACAGATCGCCAACACAGAGAAGAAACTCGACATGCCATTAGGTATGCTCTCGACCTTCAACTTCGCCTTCT GCGACGAGCTTTTTTCCGCCCTTACTGTTGATTTTGATCGCTTATGGTGTGTTCTTGTTCCGCTTTGTTTAGATGCCATCATTAAACTGTCGAAAACTGC TTCGATGGGGAAGCCGAACAAGCAATTTAGGGTTCCGAATAAAAACCAGAAGGTGTTCAACAACTCTGTGCAAGGAAAAGCCTTCAAGGGTGCTTTGGCC CAGAAGAGGTCGAATTTTCAGGGGAGCCATTTTCCTATTGCGAAAGATTTTGCACGAAAGGCTGCAGCTGCTCCCCTTCGCAATAGTGATAGACCTTTCA ACAACAATTCGATGCCTAATTCAAACAAAGCAAGGATTCTGCTCTTGCTACCAACGATGAATTATTACCTAGGAACTTGTAGTTACCTCTCTCAATTCAG TCTCTCAATATGGAATCCTGGACTTGTTTCAGACCAAAAGCTTCCAGTTGTCAAAGGAATCCCATATCAACTGTCAAGGTGCAGACTGGGACATGTTATG CACCAGAACTTGTTACCTTTCGCTTTGGGTCAGCCTGGCAGGGCACCACAGAACCAGCAGCAGCAGCAAGGTGATGGTGGCATAAAGCCAAGGACACAAA CCCTGGATGCAATGTTTGCCAACATGAAGGAGCAAAGGACAAGGGCCTTGCAGCAGCAGCAGCAGAACAATGGTGGTCGACAGAACAATTGGGGACAACA ACGGAATCCAAACTTCAGCAGACGAGGGGTTCCATGGGCAAGAAACCGATTTGCAAACTGA
AA sequence Show only first row Show all	>Lus10032393 pacid=23168560 polypeptide=Lus10032393 locus=Lus10032393.g ID=Lus10032393.BGIv1.0 annot-version=v1.0 MAALRPLTREQIANTEKKLDMPLGMLSTFNFAFCDELFSALTVDFDRLWCVLVPLCLDAIIKLSKTASMGKPNKQFRVPNKNQKVFNNSVQGKAFKGALA QKRSNFQGSHFPIAKDFARKAAAAPLRNSDRPFNNNSMPNSNKARILLLLPTMNYYLGTCSYLSQFSLSIWNPGLVSDQKLPVVKGIPYQLSRCRLGHVM HQNLLPFALGQPGRAPQNQQQQQGDGGIKPRTQTLDAMFANMKEQRTRALQQQQQNNGGRQNNWGQQRNPNFSRRGVPWARNRFAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10970			unknown protein		Lus10032393 [exp]	0	1
AT5G49960			unknown protein		Lus10041011 [exp]	2.8	0.8703
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	5.9	0.8805
					Lus10009515 [exp]	6.5	0.8496
AT1G23230			unknown protein		Lus10035997 [exp]	7.7	0.8573
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	14.8	0.8242
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10029817 [exp]	17.0	0.8434
AT3G52860			unknown protein		Lus10003357 [exp]	20.1	0.8338
AT1G23230			unknown protein		Lus10016701 [exp]	20.2	0.8418
AT1G59077			unknown protein		Lus10022089 [exp]	25.4	0.8304
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	27.4	0.8458

Compare expression of checked genes

Lus10032393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.