Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10960 494 / 7e-178 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 490 / 3e-176 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G64440 477 / 3e-171 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G12780 412 / 2e-145 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 405 / 6e-143 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT5G44480 219 / 8e-69 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G30620 217 / 4e-68 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 217 / 5e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 174 / 2e-53 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G00110 74 / 7e-15 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023074 [exp] 605 / 0 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 523 / 0 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10003875 [exp] 515 / 0 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 397 / 1e-139 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 395 / 8e-137 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10038423 [exp] 218 / 2e-68 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 181 / 2e-54 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 178 / 2e-53 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10030281 [exp] 76 / 2e-15 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G140900 [exp] 498 / 2e-179 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.001G090700 [exp] 496 / 2e-178 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 416 / 4e-147 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.011G156100 [exp] 213 / 1e-66 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 211 / 5e-66 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G459700 [exp] 209 / 6e-65 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 207 / 2e-64 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G114600 [exp] 72 / 5e-14 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.001G320000 [exp] 69 / 5e-13 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 68 / 1e-12 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10032394 pacid=23168608 polypeptide=Lus10032394 locus=Lus10032394.g ID=Lus10032394.BGIv1.0 annot-version=v1.0 ATGGACAAATGTGCTCTGGAGAAAATTTTCGCTGGGACTAAATTTGATGCTGTCATCCACTTTGCTGGACTGAAAGCAGTCGGCCAGAGTGTTGCGGAAC CGTTATTGTATTACAGTAACAATATCACCGGAACCATTAATTTGCTTGAAGTGATGGCTTCCCATGGTTGCAAGAATCTTGTCTTCTCATCATCAGCCAC AGTATACGGTTGCCCAAAGGAGGTCCCATGTACAGAAGAATGTCCAATCAGTGCAGTGAACCCATATGGGCGGACCAAGCTTTACGTCGAAGAGATTTGC CGTGATATCCACCATGCAGACTCTAAATGGCGGATTATTTTACTGAGATACTTCAATCCAGTTGGCGCACATCCAAGTGGAAAAATTGGTGAGGATCCAC GTGGAACACCGAACAATCTCATGCCCTATGTGCAGCAAGTTGCTGTTGGCAGAAGATCTCACTTAACTGTCTTCGGGACTGACTACAAGACCAAGGATGG GACCGGGGTACGTGATTTCCTTCACGTTGTGGATTTGGCTGATGGCCACATTGCTGCATTGCGCAAGCTTGATCAACCTAATATAGGTTGTGAGGTATAC AACTTGGGAACAGGGAAGGGAACATCAGTATTGGAGATGGTTGCAGCATTCGAGAAGGCATCTGGAAAGAAACTTCCTCTAAAAAAGGCTGGGCGACGAC CAGGCGATGCTGAGATAGTTTACGCCTCGACAGCCAAGGCCGAACGTGAATTGAATTGGACGGCGAAATACGGGATTGAAGAAATGTGCAGGGACCAATG GAACTGGGCGAGCAACAACCCTTACGGCTACGGATCCGCTGATGCACCAAACGGAACCAAATGA
AA sequence Show only first row Show all	>Lus10032394 pacid=23168608 polypeptide=Lus10032394 locus=Lus10032394.g ID=Lus10032394.BGIv1.0 annot-version=v1.0 MDKCALEKIFAGTKFDAVIHFAGLKAVGQSVAEPLLYYSNNITGTINLLEVMASHGCKNLVFSSSATVYGCPKEVPCTEECPISAVNPYGRTKLYVEEIC RDIHHADSKWRIILLRYFNPVGAHPSGKIGEDPRGTPNNLMPYVQQVAVGRRSHLTVFGTDYKTKDGTGVRDFLHVVDLADGHIAALRKLDQPNIGCEVY NLGTGKGTSVLEMVAAFEKASGKKLPLKKAGRRPGDAEIVYASTAKAERELNWTAKYGIEEMCRDQWNWASNNPYGYGSADAPNGTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10032394 [exp]	0	1
AT1G33260			Protein kinase superfamily pro...		Lus10016382 [exp]	12.8	0.8505
AT5G47540			Mo25 family protein (.1)		Lus10041405 [exp]	17.3	0.8408
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	19.8	0.8166
AT1G30700			FAD-binding Berberine family p...		Lus10035466 [exp]	20.8	0.8021
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	28.4	0.8049
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10029096 [exp]	30.0	0.7899
AT1G47740			PPPDE putative thiol peptidase...		Lus10040485 [exp]	31.4	0.8171
AT1G47740			PPPDE putative thiol peptidase...		Lus10011291 [exp]	33.6	0.8464
AT5G65650			Protein of unknown function (D...		Lus10014322 [exp]	33.9	0.7958
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	33.9	0.8049

Compare expression of checked genes

Lus10032394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.