Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42080 86 / 1e-21 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 84 / 1e-20 ADL1B DYNAMIN-like 1B (.1) AT2G44590 66 / 3e-14 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G14830 59 / 6e-12 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G60190 59 / 7e-12 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023073 [exp] 88 / 3e-22 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 86 / 3e-21 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10003873 [exp] 85 / 4e-21 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 84 / 7e-21 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10030255 [exp] 84 / 1e-20 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10019506 [exp] 62 / 6e-13 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10040117 [exp] 53 / 9e-10 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10019170 [exp] 51 / 5e-09 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 51 / 5e-09 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090600 [exp] 87 / 5e-22 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 85 / 4e-21 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 82 / 2e-20 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.002G135100 [exp] 64 / 9e-14 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 63 / 3e-13 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G147500 [exp] 61 / 1e-12 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 58 / 1e-11 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032395 pacid=23168531 polypeptide=Lus10032395 locus=Lus10032395.g ID=Lus10032395.BGIv1.0 annot-version=v1.0 ATGGAGAATTTGATTACTATCGTCAACAAGATTCAGAGAGCCTGCTCGGCTCTCGGTGATCACGGTGAAGATAGCGCGTTGCCTACTCTTTGGGATTCAT TGCCTGCTATCGCCGTCGTCGGCGGTCAGCTTACCTTCTTCTCCCTTTCTCTCTGTTCTAAGCTCCCGCGAAGCAGTGAATTCGAAGCTAAACTGTCATG TTGA
AA sequence Show only first row Show all	>Lus10032395 pacid=23168531 polypeptide=Lus10032395 locus=Lus10032395.g ID=Lus10032395.BGIv1.0 annot-version=v1.0 MENLITIVNKIQRACSALGDHGEDSALPTLWDSLPAIAVVGGQLTFFSLSLCSKLPRSSEFEAKLSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10032395 [exp]	0	1
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	38.3	0.6004
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001168 [exp]	44.5	0.5619
AT3G58860			F-box/RNI-like superfamily pro...		Lus10003216 [exp]	50.0	0.5542
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	63.9	0.5454
AT3G48100		ATRR2, IBC6, AR...	INDUCED BY CYTOKININ 6, ARABID...		Lus10004243 [exp]	101.4	0.4792
AT3G49550			unknown protein		Lus10000077 [exp]	120.1	0.5081
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10001706 [exp]	156.6	0.5021
					Lus10000293 [exp]	160.8	0.4944
					Lus10000901 [exp]	170.4	0.4857
AT2G32360			Ubiquitin-like superfamily pro...		Lus10039658 [exp]	197.9	0.4675

Compare expression of checked genes

Lus10032395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.