Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10955 197 / 2e-60 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G05260 169 / 3e-49 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24230 139 / 5e-38 Lipase class 3-related protein (.1) AT5G24180 110 / 2e-27 Lipase class 3-related protein (.1) AT5G24220 104 / 3e-25 Lipase class 3-related protein (.1) AT5G24190 99 / 5e-24 Lipase class 3-related protein (.1) AT5G24200 98 / 4e-23 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 84 / 8e-18 alpha/beta-Hydrolases superfamily protein (.1) AT5G50890 44 / 9e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003188 [exp] 275 / 9e-91 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018097 [exp] 159 / 9e-46 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10022416 [exp] 107 / 5e-27 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10007331 [exp] 48 / 6e-06 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 45 / 7e-05 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10023072 [exp] 0 / 1 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001819 [exp] 0 / 1 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090500 [exp] 266 / 4e-87 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G141100 [exp] 256 / 2e-83 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G058100 [exp] 46 / 2e-05 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032396 pacid=23168619 polypeptide=Lus10032396 locus=Lus10032396.g ID=Lus10032396.BGIv1.0 annot-version=v1.0 ATGGTGCGCTCCTATATTGAGAAGGTCAGTCGCCGCCAGTCTAGTCCAAGGAGTCTACATCGTAGAGCGCGACCGCCAGCTCAAACGTCAACCCCCAACA TCACTAGCTCCCCCATGGTGGGAGTTTTTCCATTTCAAGCTCCTCCGTCAGCTCGTGGACGACGTCGATCACTGCATATTTGGCGCCATATTCGAGGACA GACCTCCTTTTCCAGCATCGTCCCACGATCATCACTATTTAGACTCGAGCCCCCGCTACGTGATCGCCTTCCGCGGCACCTTAACCAAGCCGGACTCGTT CGCTCGCGACATCGAGCTCGACCTCCACATCATAAGGAACGGTCTCCACGAGACGTCTCGTGTCGAGATAGCAATGCGGGCCGTCCGGAACATGGTCTCC GCTGTAGGCGACTCGAGCGTGTGGCTGGCGGGGCATTCTCTTGGAGCGTTTTTCCAATGGCAATGCTGGCCGGTAAGACCATGGCCAAGACCGGCACAAG TTTCGTCCAGGCATTTTTGTTCAACTCGCCATTCTTCTCCGCGCCAATCGAGAGGATCAAGGACAAGCGGGTCCAGCACGGTATCAGGATCGCTAGCAGC GTGATCACCGCAGGACTTGCATTTGCTTCTTCTAAGAAGAAGAAAAACAACGATGGTATAACCAACGGATCCTCCTCTGCGGTGGATCTGCTCGTGGCTC TGTCGTCGTGGATCCCTTGCATTTTTGCGAATGCGGGGGATCCTATATGCTCGGAGTACATTGGGTACTTTGAACATAGGAAGAAGATGGACGAGATTGG GATCGGAGGGATTGAGAAGCTGGCGACTCAGAATACGTTGGGAGGTCTTTTGATGAGTGTCGTCGGGAGGGATTCGGAGCCACTCCACCTCATTCTGTCG GCCATTTTGGCGGTTAATTTGAATCGTTGTCAGGATTTTACAGAAGCACACGGCATTCATCAGTGGTGGAGACCTGATTTGCAGCTCCAATCCAAGCTTT ACAAGTACAGCTAG
AA sequence Show only first row Show all	>Lus10032396 pacid=23168619 polypeptide=Lus10032396 locus=Lus10032396.g ID=Lus10032396.BGIv1.0 annot-version=v1.0 MVRSYIEKVSRRQSSPRSLHRRARPPAQTSTPNITSSPMVGVFPFQAPPSARGRRRSLHIWRHIRGQTSFSSIVPRSSLFRLEPPLRDRLPRHLNQAGLV RSRHRARPPHHKERSPRDVSCRDSNAGRPEHGLRCRRLERVAGGAFSWSVFPMAMLAGKTMAKTGTSFVQAFLFNSPFFSAPIERIKDKRVQHGIRIASS VITAGLAFASSKKKKNNDGITNGSSSAVDLLVALSSWIPCIFANAGDPICSEYIGYFEHRKKMDEIGIGGIEKLATQNTLGGLLMSVVGRDSEPLHLILS AILAVNLNRCQDFTEAHGIHQWWRPDLQLQSKLYKYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10032396 [exp]	0	1
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10016285 [exp]	12.7	0.5561
AT2G28085			SAUR-like auxin-responsive pro...		Lus10041336 [exp]	17.0	0.5264
AT4G18540			unknown protein		Lus10036093 [exp]	21.0	0.5319
AT3G54250			GHMP kinase family protein (.1...		Lus10008966 [exp]	23.3	0.5606
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Lus10027741 [exp]	30.2	0.5052
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10006779 [exp]	34.0	0.5064
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	36.5	0.5109
AT3G03000			EF hand calcium-binding protei...		Lus10004610 [exp]	36.6	0.5139
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013385 [exp]	41.0	0.4779
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	42.3	0.5246

Compare expression of checked genes

Lus10032396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.