Plant FIBer expression Database

Lus10032397 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23930 82 / 2e-21 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
AT1G64450 71 / 6e-16 Glycine-rich protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023071
[exp]
150 / 7e-48 AT1G64450 191 / 3e-62 Glycine-rich protein family (.1)
Lus10001818
[exp]
79 / 7e-20 AT1G64450 86 / 4e-20 Glycine-rich protein family (.1)
Lus10003189
[exp]
77 / 4e-18 AT1G64450 158 / 7e-48 Glycine-rich protein family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G090400
[exp]
100 / 4e-28 AT4G23930 166 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Potri.003G141200
[exp]
97 / 8e-27 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
PFAM info
Representative CDS sequence
>Lus10032397 pacid=23168545 polypeptide=Lus10032397 locus=Lus10032397.g ID=Lus10032397.BGIv1.0 annot-version=v1.0
ATGTTCATACCCGCCGGAGAAATCGGCGCCGGCCAGACCAAGTACATGGACGCCAGCTTCTCCGTCACGTCCTTCCCCTTGTCGGCTAATCCCGCCGCCG
TTGGTGGTGGGGTCGGGCCGACGATGGAGATGGAGTCGAGGATTCGGTTTGTGGGTCGGGTTCGGGTTCTGAACTTGTTCTCACACCACGTGGGGGGTAA
AACCCGGTGCCGGGTCGCCGTCTCCTTGAGTGATGGATCTGTGATGGGCTTCCATTGCTAA
AA sequence
>Lus10032397 pacid=23168545 polypeptide=Lus10032397 locus=Lus10032397.g ID=Lus10032397.BGIv1.0 annot-version=v1.0
MFIPAGEIGAGQTKYMDASFSVTSFPLSANPAAVGGGVGPTMEMESRIRFVGRVRVLNLFSHHVGGKTRCRVAVSLSDGSVMGFHC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G23930 Late embryogenesis abundant (L... Lus10032397
[exp]
0 1
AT1G02700 unknown protein Lus10036329
[exp]
3.0 0.8155
Lus10036558
[exp]
4.9 0.7935
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10022446
[exp]
8.3 0.8028
AT4G17600 LIL3:1 Chlorophyll A-B binding family... Lus10011016
[exp]
14.4 0.8039
AT1G56345 Pseudouridine synthase family ... Lus10020693
[exp]
14.8 0.7636
AT5G15450 AtCLPB3, APG6, ... CASEIN LYTIC PROTEINASE B-P, A... Lus10013191
[exp]
16.5 0.8006
AT5G17780 alpha/beta-Hydrolases superfam... Lus10003871
[exp]
16.5 0.7926
AT3G27030 unknown protein Lus10032030
[exp]
17.4 0.7643
AT3G62630 Protein of unknown function (D... Lus10020690
[exp]
18.7 0.7825
AT3G48610 NPC6 non-specific phospholipase C6 ... Lus10025726
[exp]
19.2 0.7968

Lus10032397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.