Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10950 455 / 1e-159 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 210 / 4e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 206 / 8e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 191 / 3e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 191 / 5e-57 GLIP7 GDSL-motif lipase 7 (.1) AT1G71250 186 / 3e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 186 / 4e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 183 / 3e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 181 / 4e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 178 / 1e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001532 [exp] 657 / 0 AT4G10950 544 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10000876 [exp] 215 / 4e-68 AT4G10950 166 / 1e-49 SGNH hydrolase-type esterase superfamily protein (.1) Lus10016929 [exp] 199 / 1e-59 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10002775 [exp] 192 / 2e-57 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 191 / 6e-57 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 191 / 9e-57 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 188 / 7e-56 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 184 / 2e-54 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008635 [exp] 184 / 2e-54 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141300 [exp] 503 / 2e-178 AT4G10950 535 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G062342 [exp] 299 / 4e-101 AT4G10950 337 / 7e-116 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G064500 [exp] 202 / 4e-61 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 198 / 7e-60 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 194 / 2e-58 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 194 / 4e-58 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 191 / 3e-57 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 188 / 3e-56 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.009G157800 [exp] 189 / 4e-56 AT4G10950 233 / 5e-73 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 187 / 1e-55 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10032399 pacid=23168551 polypeptide=Lus10032399 locus=Lus10032399.g ID=Lus10032399.BGIv1.0 annot-version=v1.0 ATGGCGACTGCGGCGGCCACGATTCTTCCGCTTCTGTTGATAGTCTTCGCCGCCGTTTTCAACCAATCGATGACCCTAACTGTTCCTCAGCAACTATACG ACTTCTCTCAGACGATCTTTGCCTACGAAAGTAACGGCCCTTTCGTTTCCCCTTCTTCTTCTTCTTCTCCTTCCTTTCCCCCGCTTACTTCCGTCCCCTC CGTATCCCCTTCGCCGTACTCCAGTTCTCCGCCGCCTCTTGTTCCGGCGCTCTTCGTGATCGGAGATTCCGCCGTCGATTGCGGTACCAACAACTACCTA GGCACCTTCGCACGCGCCGATCGCCCTCCGTACGGAAGAGATTTCGACACGCGCAGGCCCACTGGAAGGTTCTGCAACGGACGGATTCCTGTCGATTATC TTGCATTACGCCTAGGGCTACCATTTGTTCCAAGCTATCTGGGGGAGAATGGAACTTTGGGAGACATGATCCATGGAGTAAACTATGCATCAGCTGGAGC TGGCATTATTTTCTCGAGTGGCTCAGAACTGGGTCAGAGGATCTCCCTGACTCACCAAGTTCAGCAGTTCACTGATTCATTACAGACATTCATCTTGAAC ATCGGTGAGAAAGCTACAGAAGAGCTGGTATCTAACTCGGTTGTGTACATATCAATCGGGATCAATGATTACATCCACTACTACCTACCTAACATCTCCA ATAACTTGTATGACATGAGTGTGAGGAAAATGGTGATCATGGGGATGCCTCCTATTGGCTGTGCTCCTCATTACCTGTGGAAGTATAACAGCAAGGATGG AGAATGTGTGAAGGAGATAAATAACATGATTATGGAGTTTAACTTTTTCATGAGGTACATGATTGAGCAGTTATATCACGAGCTCCCTGACGCCAAAATC ATCTTCTGTGATGTCTATGAAAGTTCGATGGATATCATTAAGAACCATGAGCATTACGGGTTTACTGAGACAACAAGTGCTTGCTGTGGTTTAGGAAAGT ACAAGGGCTGGATAATGTGCATTGCGCCAGAAATGGCTTGTAGCAATGCCTCCAATCATATCTGGTGGGATCAATACCATCCTACTGCTGCTGCGAATGC GATTCTCGCTGACAATATATGGAATGGCTTGCATACAAGGATGTGCTATCCCACGAACATGGAAGACATTGTATCTCGAAGAGCGCAACGATTTTGA
AA sequence Show only first row Show all	>Lus10032399 pacid=23168551 polypeptide=Lus10032399 locus=Lus10032399.g ID=Lus10032399.BGIv1.0 annot-version=v1.0 MATAAATILPLLLIVFAAVFNQSMTLTVPQQLYDFSQTIFAYESNGPFVSPSSSSSPSFPPLTSVPSVSPSPYSSSPPPLVPALFVIGDSAVDCGTNNYL GTFARADRPPYGRDFDTRRPTGRFCNGRIPVDYLALRLGLPFVPSYLGENGTLGDMIHGVNYASAGAGIIFSSGSELGQRISLTHQVQQFTDSLQTFILN IGEKATEELVSNSVVYISIGINDYIHYYLPNISNNLYDMSVRKMVIMGMPPIGCAPHYLWKYNSKDGECVKEINNMIMEFNFFMRYMIEQLYHELPDAKI IFCDVYESSMDIIKNHEHYGFTETTSACCGLGKYKGWIMCIAPEMACSNASNHIWWDQYHPTAAANAILADNIWNGLHTRMCYPTNMEDIVSRRAQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10950			SGNH hydrolase-type esterase s...		Lus10032399 [exp]	0	1
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	2.8	0.9823
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	5.6	0.9825
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	6.0	0.9805
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	6.9	0.9795
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	12.0	0.9805
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	13.4	0.9814
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	14.1	0.9637
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Lus10035670 [exp]	14.7	0.9769
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	16.6	0.9764
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	24.2	0.9786

Compare expression of checked genes

Lus10032399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.