Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64480 263 / 3e-87 CBL8 calcineurin B-like protein 8 (.1) AT5G24270 259 / 1e-85 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G17615 240 / 3e-78 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT4G26570 238 / 5e-77 ATCBL3 calcineurin B-like 3 (.1.2) AT5G55990 236 / 3e-76 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT5G47100 234 / 4e-76 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G33000 223 / 3e-71 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT4G16350 199 / 3e-62 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G01420 199 / 4e-62 CBL5 calcineurin B-like protein 5 (.1) AT4G26560 176 / 3e-53 CBL7 calcineurin B-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023069 [exp] 413 / 3e-146 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10001816 [exp] 352 / 4e-122 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 351 / 1e-121 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10022407 [exp] 283 / 7e-95 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 276 / 3e-92 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10011028 [exp] 245 / 4e-80 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10030252 [exp] 237 / 7e-77 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10015630 [exp] 231 / 4e-74 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 224 / 3e-71 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015100 [exp] 283 / 6e-95 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G090200 [exp] 283 / 8e-95 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.015G013100 [exp] 281 / 2e-94 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 261 / 2e-86 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G371700 [exp] 241 / 1e-78 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.016G003500 [exp] 240 / 4e-78 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.003G084200 [exp] 239 / 5e-78 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.006G002900 [exp] 239 / 9e-78 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.003G141400 [exp] 236 / 1e-76 AT5G24270 238 / 8e-80 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.003G037800 [exp] 237 / 2e-76 AT4G33000 286 / 5e-98 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032400 pacid=23168463 polypeptide=Lus10032400 locus=Lus10032400.g ID=Lus10032400.BGIv1.0 annot-version=v1.0 ATGCTTGCATTTCGTGGATGTTTCTCCAAACAGAAGATCAAAAAGCAGGCGCGGTACGAAGCTAATGCTCTGCTTGCTTCTGAAACACCTTTCACAATCA ATGAAATAGAAGCATTGTACAACCTTTTCCAGAAGCTAAGCAGCTCTGTACTTAATGACAACCTTATTCACAAGGAACAATTCTTATTTGCACTTGTCAG AAGTAGGAAGACTAGCAACCTTTTCGCTGAGAGGGTTTTCGCTTTGTTTGATATAAAGCACAACGGGGTGATAGAATTCGATGAATTTGTCCGTTCATTA AGTGTCTTCCATCCTCGGGCTCTGCTAGCTGACAAGATATCATTTGCATTCAGGTTCTACGATCTGCGAGACACTGGCTACATTGAACGGGACGAGTTGA AGGAGATGGTACTAGCTATCCTGAGTGAATCGCGCTTGACCCTTTCGGAAGACAACATCGAATCCATGGTTGATAAGACACTAGCAGAGGCAGACTTGAA TGGAGATGGAAAGATCGACAAACAAGAATGGAAGGAACTGGTAGCGAAGCATCCGTCTCTCATAAGGAACATGACAATTCCATACCTAAGGGACTTGACT GTTTCATTTCCAAGCTTTGTACTGATCAGTGAAGATGAAGTTGAAGCTTTGTTTGAGCTGTTCAGAAAACTAAGCAGTTCCTTAGTGGATGATGGGCTTA TAAGCAAAGAAGAGTTCCAGCTGGGTTTATTTGGTAACAGCAAGAAGCAGACTCTCCTTGCTAATAGATTATTCCAGCTGTTTGATGCCAAGAGGGATGG AGCAATAGATTTCCACGAGTTTGTAACAGCTTTGAGTGTGTTCCACCCCAAAGCAGCTCAATCAGAGAAAGTTGCTTTTTCGTTCCAGCTCTACGACATC TCGGAAACCGGCTTCATTCAGCGCAAAGAAGTCAAAGAGCTGGTTGTAGCACTTTTAGATGAGTCGGACTTGGTACTTACAGATGATATAGTTGAAGCCA TTGTTGACAAGACATTCAATGATGCTGATTCCAAAGCCGACGGGAAGATCGATCAAGAGGAATGGAAGGAGTTCACAACTCGCAACCCGTCAATGCTGCA GAGTTTTACTCTTCCATATCTGCTGTACTTACACCTTTATAACCTTCCTTGCTTCACATCTAAAACTTATAGGATGTTATAA
AA sequence Show only first row Show all	>Lus10032400 pacid=23168463 polypeptide=Lus10032400 locus=Lus10032400.g ID=Lus10032400.BGIv1.0 annot-version=v1.0 MLAFRGCFSKQKIKKQARYEANALLASETPFTINEIEALYNLFQKLSSSVLNDNLIHKEQFLFALVRSRKTSNLFAERVFALFDIKHNGVIEFDEFVRSL SVFHPRALLADKISFAFRFYDLRDTGYIERDELKEMVLAILSESRLTLSEDNIESMVDKTLAEADLNGDGKIDKQEWKELVAKHPSLIRNMTIPYLRDLT VSFPSFVLISEDEVEALFELFRKLSSSLVDDGLISKEEFQLGLFGNSKKQTLLANRLFQLFDAKRDGAIDFHEFVTALSVFHPKAAQSEKVAFSFQLYDI SETGFIQRKEVKELVVALLDESDLVLTDDIVEAIVDKTFNDADSKADGKIDQEEWKEFTTRNPSMLQSFTLPYLLYLHLYNLPCFTSKTYRML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10032400 [exp]	0	1
AT3G53400			unknown protein		Lus10019932 [exp]	12.5	0.8978
AT4G35160			O-methyltransferase family pro...		Lus10023986 [exp]	20.6	0.8712
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	21.4	0.8930
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	22.4	0.8896
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	28.6	0.8697
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	28.8	0.8704
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	31.1	0.8802
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	31.7	0.8846
					Lus10007009 [exp]	34.0	0.8598
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	34.5	0.8631

Compare expression of checked genes

Lus10032400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.