Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53570 51 / 5e-09 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G24740 48 / 6e-08 AME1, AFC2 FUS3-complementing gene 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027636 [exp] 84 / 1e-21 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10025301 [exp] 54 / 5e-10 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10024431 [exp] 54 / 5e-10 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10019458 [exp] 53 / 1e-09 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 53 / 1e-09 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 53 / 2e-09 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10006230 [exp] 42 / 7e-06 AT4G24740 276 / 8e-93 FUS3-complementing gene 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213400 [exp] 56 / 1e-10 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.016G079900 [exp] 53 / 1e-09 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.015G085700 [exp] 52 / 2e-09 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 48 / 6e-08 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.010G049100 [exp] 47 / 1e-07 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032401 pacid=23168575 polypeptide=Lus10032401 locus=Lus10032401.g ID=Lus10032401.BGIv1.0 annot-version=v1.0 ATGTTGAAGGGAGCAGCAGATCGACAGGGTGCCAATTTTCAGCCCGGCCAAAGAATCAAACTGATATGGCCAGATGATGATGATGATGATGATGACACAT CTAGTGAGAGGATAACGAATCTACCTACGCTTCCAAATTTGGTAATTTGGAATGTGGACCATTCTGCTGGCAATTTCATCCGTCTGTTGCGAGGACTTCT CGAGTACGATCCTTCGGCTGACTGCACGCCAGGCTTTGAGCCATAA
AA sequence Show only first row Show all	>Lus10032401 pacid=23168575 polypeptide=Lus10032401 locus=Lus10032401.g ID=Lus10032401.BGIv1.0 annot-version=v1.0 MLKGAADRQGANFQPGQRIKLIWPDDDDDDDDTSSERITNLPTLPNLVIWNVDHSAGNFIRLLRGLLEYDPSADCTPGFEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10032401 [exp]	0	1
					Lus10009766 [exp]	6.7	0.5827
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	7.7	0.7398
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009681 [exp]	9.6	0.6183
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	11.0	0.7398
					Lus10026928 [exp]	13.4	0.7398
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	15.5	0.7398
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	17.3	0.7398
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10037513 [exp]	18.3	0.5793
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	22.4	0.7277
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	24.7	0.7141

Compare expression of checked genes

Lus10032401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.