Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32050 624 / 0 neurochondrin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023067 [exp] 1004 / 0 AT4G32050 538 / 0.0 neurochondrin family protein (.1) Lus10001536 [exp] 214 / 4e-65 AT4G32050 125 / 9e-33 neurochondrin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G022800 [exp] 756 / 0 AT4G32050 751 / 0.0 neurochondrin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05536 [flax] [poplar] Neurochondrin Neurochondrin
Representative CDS sequence Show only first row Show all	>Lus10032403 pacid=23168532 polypeptide=Lus10032403 locus=Lus10032403.g ID=Lus10032403.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCTCAGACTCCATCTATCGCTGACTGCTTGAAGCTACTGAAAGGCGAGAGGGACGAGCAACGCCTCGCCGGTTTACTTCTAGTCACCAAAG TTTGCAAGCGAAACGACCTCGCCACTTTGCGCGCCGTTTATGATGCTGTTGACATTCGCTTCCTTGATAGGCTCTTTAAGACCGGGATGGGAAAAGGACC TGCGGCAGGCAGCGGGGTGGATAACCGAGAAGCATACTTGCAGCTGACGGTTACTGTTGTTGCTACATTTTGCCGTGTCCCCGAAATCGCTGCTTCTAAA GATATGGTTTCAAAGATTCCAATGATTCTGAAAATAATGGCCGCATCGAATGCTCCTATTCTTGAAGAATGTTGTGAAATTTTATATCTGGTAGCAACTT CTTCAGAAGATGGAGTGGGCGTGTTTTATCAATCTGATGGCCTCAAAGTCGTAGCTTCAAGAATCCATACGATACCTGATGGCTCTCATACCGCAGAACT ATTGATCAAGATGTTACTGCATATACTTAGTAAGCTGCCTCAAGATTTCAGAACAAGCAACCATCTTTCTGACCTTGCAACAGTGGTGGAATATTTGGGA AGACAGTTTGGTTTATTGCAGAGTCCCTTGAAATTTGATGCACTTCATTTGCTCTCTCAGATCTTCTCATCGAAGTATGCGGAACCGCTTTGTGGTACCT TGCGTGTAATGGGGGACAACAATTGGTCGGACTATATCCACATTGGTGTTGTGGATATTTTGCAAAACCGAGTAGCTCCTGCTGATAAAGTTCATGCTCT TATTTTGGCTGAATCAATGTTGTCTATATCCGGGGGGAAATGGCTGCTCCGGCAGCCAAAATTAACTGATCACCAAGTGCCATTGCCAATTGACAGGTGT CTATTGCTTGTCTTGGAATCTGCAAGAGTAGAAGTGGCTGTTTTGCTGAATGAGCTGGCCTATCTGAAGTACGAAGCTTCAAAGAGTACTTTCTGTGATG ACACCATTTCCTCGAAGCAGCAAAATCTAACTATTGTATTCTCCTTGATCGAGAGAATAATCAAACTGATATCAGAAATGGCTGAAGATGAAGGGAAAGT CATTAACGAATCAACTATCATCAATATGATCAATGGGCTTAATGAGACAGCTACTATAGTGTTGGAGTATTTGCAAGATGCAAGGGAGCACGGAGAAAAG AAAGGAAATGACCTTCTTGCTTCAGTACGGCTTCTTGGGAGCTATCTTGCCGAAACACCCAATGCCTTGAAGGAGAAGGTTGAAGAGCTTTTGGAGTACT TGTTGTCAATTGAAGGTGAAGATGAAACAAGCCCTTTTTATTCGTTATGCTTCCTACTTCCAATGCTTTGCCAAATGACAATGGAGATTCAAGGATGCAA AACTTTGATTTCATCCGGATGCCATAAGACTGTGGTTGAATTTCTGGTAACGTTGATCCATAGTGACATAGAAGATGTTGATCGGATCTTTTTGGCATGC GACACAGTAATGAATCTTCTTTTGAAGCAAGAACAAATGCACTTGAGGATGGAAGAACCAACTTGCATTGATTTGTTGAATGCTTTGTCGTACTGGGCAG AAGAGACTAACGATCAATCTGTTCTGATGATGGCGGCAAGTATGTGTGCACTAATATTAGATTCCACATCAGAGGCGGCCCTTTTAAATCATCCAAATTT CAACTTGAGATCTCTAAGCTATCTATGTCAGCTCATTTCAAGAAGCTTAGCATTGTCTAAAAAGGGCACAGCGAACGACATTGAAGCACAAATGGATCTG ATTGAGATTGTTACTGCAGGATTCTCAAGGTGGGCCAACCGGTTCCCCAGCCTAAAAGCAGCAGCAGCGCTTGAGAAAAATTGA
AA sequence Show only first row Show all	>Lus10032403 pacid=23168532 polypeptide=Lus10032403 locus=Lus10032403.g ID=Lus10032403.BGIv1.0 annot-version=v1.0 MEEAQTPSIADCLKLLKGERDEQRLAGLLLVTKVCKRNDLATLRAVYDAVDIRFLDRLFKTGMGKGPAAGSGVDNREAYLQLTVTVVATFCRVPEIAASK DMVSKIPMILKIMAASNAPILEECCEILYLVATSSEDGVGVFYQSDGLKVVASRIHTIPDGSHTAELLIKMLLHILSKLPQDFRTSNHLSDLATVVEYLG RQFGLLQSPLKFDALHLLSQIFSSKYAEPLCGTLRVMGDNNWSDYIHIGVVDILQNRVAPADKVHALILAESMLSISGGKWLLRQPKLTDHQVPLPIDRC LLLVLESARVEVAVLLNELAYLKYEASKSTFCDDTISSKQQNLTIVFSLIERIIKLISEMAEDEGKVINESTIINMINGLNETATIVLEYLQDAREHGEK KGNDLLASVRLLGSYLAETPNALKEKVEELLEYLLSIEGEDETSPFYSLCFLLPMLCQMTMEIQGCKTLISSGCHKTVVEFLVTLIHSDIEDVDRIFLAC DTVMNLLLKQEQMHLRMEEPTCIDLLNALSYWAEETNDQSVLMMAASMCALILDSTSEAALLNHPNFNLRSLSYLCQLISRSLALSKKGTANDIEAQMDL IEIVTAGFSRWANRFPSLKAAAALEKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	0	1
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	1.0	0.9036
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018404 [exp]	2.8	0.8182
AT2G03667			Asparagine synthase family pro...		Lus10004643 [exp]	3.9	0.8295
AT5G39960			GTP binding;GTP binding (.1)		Lus10014634 [exp]	4.0	0.7983
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	4.6	0.8396
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10006979 [exp]	5.2	0.8141
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	6.0	0.8306
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	8.8	0.8100
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	9.2	0.8110
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	9.6	0.7931

Compare expression of checked genes

Lus10032403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.