Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23950 419 / 7e-140 Galactose-binding protein (.1.2) AT1G71360 334 / 2e-106 Galactose-binding protein (.1) AT1G22882 331 / 2e-104 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023065 [exp] 1078 / 0 AT4G23950 427 / 9e-143 Galactose-binding protein (.1.2) Lus10002929 [exp] 317 / 5e-98 AT1G71360 476 / 1e-159 Galactose-binding protein (.1) Lus10003532 [exp] 297 / 6e-93 AT1G71360 432 / 3e-146 Galactose-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089700 [exp] 550 / 0 AT4G23950 399 / 3e-132 Galactose-binding protein (.1.2) Potri.003G141500 [exp] 550 / 0 AT4G23950 411 / 4e-137 Galactose-binding protein (.1.2) Potri.019G068900 [exp] 348 / 8e-112 AT1G71360 484 / 3e-165 Galactose-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF07738 [flax] [poplar] Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence Show only first row Show all	>Lus10032405 pacid=23168487 polypeptide=Lus10032405 locus=Lus10032405.g ID=Lus10032405.BGIv1.0 annot-version=v1.0 ATGAGGAAGCAACCTCGGAATAGCAACATCAGCAACGGTACCGGCGGCGGAGGAGGTAACTTACCGGTAGGAAACTCCCCCGTCGTCAGGTGCCGGGAAA TCAGAATCGATAATCAGAAGGAGGACAGCGTTTGCTGCAACCCATGTTTGAGGAATCATCTCAGGAATGGGAGAGGGAAACGCAGCTTGTACGAGCTTTC TTTATCGTTCATCATCTTGCTTTGGTCCCTCGTTTTCTACACCAGGCTCGGCCTCACCCACCAGAACGAAGGGAATTCAACTGGTGATGGGGTCAGCAAA CCAATTCCAGGTCCTATTTCTCCATATAGAGGAAACTACAGTCCAAGTGGAATGTTGTTGAATTTTAATGTCTCCTCAGATACTGGTGTCAATAATTCTC CAATTCATCTTCATTTTTCTAATTGTAAGTGCTCCATTCCCAAGATAAATAGAACGGAAGAGGTGATCAGGAGCTTCTTAGGAGATAGAGTTTTAGTGTG TAGCTTAAGGAGTCCGGAAGAATTGGAATTAGGTAACTTGAACGAACTACCGGGAGGTAAATCGTCTTATGATTCGGGTCCTTATCTCAATCTGGATGAG TTCAGGAACATAACCAAGCAAGATAAAGAACAGAATGTGTCCACCGAGCATGCCACTATCGCCCACCGGCTTGAACCTGATGGGTCCGAGTACAATTTTG CCTCTGCAATGAAAGGCGCAAAGGTGGTGGCACATAATAAGGAAGCTAAAGGAGCTGGCAATATACTAGGAGAGGATCATGACAAATACTTGAGGAACCC TTGTTCCGTTGAGGAGAAGTTTGTAGTCATTGAGCTTTCAGAGGAAACTTTGGTTGATGTGGTGAAGATTGCGAATTTTGAGCACTACTCTTCGAATTTC AAGGATATTGTATTGTATGGAAGTTTGAATTATCCGACTAATGCTTGGACGCTGTTCGGGGAGTTTGCTGCTGCAAATGTCAAGCAGATTCAGAATTTTA AGCTGCCTGAACCAAAATGGGCAAGATACTTGAAGCTGAACCTGCTTAGTCACTACGGCTCGGAGTTCTACTGCACGTTGAGTGTTTTTGAGGTACACGG AGTTGATGCCATTGAGCGAATGCTTAAAGATCTTTTGGTTCCATCTAAAGAATCTGCTCCTAGTGATTCACCAGAGTCAACTGAGCCTCCAGCTTTAAAG CTAGAGACGGGAACAGTTTCAAAAGAAGCTGATAATGCAGGTAAAGGGAAAGAAAACGGTGATGATGGTCAACAGAAGCATGGAAATGTAGTGAAGAGCA GCGGAACCTTGAGTGAGATTCCTGATCCTGTGAGTGAAGTAAGACAAATGCCATCATCTAAGAGGATACCCAGTGATACCGTTCTAAAGATCTTGATGCA GAAGGTGAGATCACTTGAGGTGAACTTGTCATTACTGGAGGAGTACATCAAGCAACTGAATCATAAGCAAGGTGATGTGTTGCTCGAGTTTGATAAGGAG CTATCGAGAATCTCATCGATCGTGGAACTCAGCAAAACCGAACTTAGCAGCCTTACGAAATGGAAACAAGAGATGGAAAGAGGACTCAGGGAGCTTGAGT CTTGGAAAGATGTTGTCTCTACACGCTTGGATGTACTTGGCAGAGAAAATGACATGCTAAGATATGATGTTCAAAGGGTGGGGAACGATCAAGCGAGCCT GGAAAACAAAGAGATGGCAGTGCTATTAATCAGCTTGTTCTTCATGTGTTTCGCTACCATCAAGTTAGTATCAGCAAAACTGTCCAAGTTCTTAGGAGCT TCCTACTCCTCCTCTTCATCCTCTACACGGCCTAATAAAGCTCACCGAGCTGATGGTGGCGGAGGTGGTGGTGGTGGAGGGTGGCTTATGATTCTGGTTA GCAGCACTATGACCATCTTCATCACCTTGCTCTCTAGTTAG
AA sequence Show only first row Show all	>Lus10032405 pacid=23168487 polypeptide=Lus10032405 locus=Lus10032405.g ID=Lus10032405.BGIv1.0 annot-version=v1.0 MRKQPRNSNISNGTGGGGGNLPVGNSPVVRCREIRIDNQKEDSVCCNPCLRNHLRNGRGKRSLYELSLSFIILLWSLVFYTRLGLTHQNEGNSTGDGVSK PIPGPISPYRGNYSPSGMLLNFNVSSDTGVNNSPIHLHFSNCKCSIPKINRTEEVIRSFLGDRVLVCSLRSPEELELGNLNELPGGKSSYDSGPYLNLDE FRNITKQDKEQNVSTEHATIAHRLEPDGSEYNFASAMKGAKVVAHNKEAKGAGNILGEDHDKYLRNPCSVEEKFVVIELSEETLVDVVKIANFEHYSSNF KDIVLYGSLNYPTNAWTLFGEFAAANVKQIQNFKLPEPKWARYLKLNLLSHYGSEFYCTLSVFEVHGVDAIERMLKDLLVPSKESAPSDSPESTEPPALK LETGTVSKEADNAGKGKENGDDGQQKHGNVVKSSGTLSEIPDPVSEVRQMPSSKRIPSDTVLKILMQKVRSLEVNLSLLEEYIKQLNHKQGDVLLEFDKE LSRISSIVELSKTELSSLTKWKQEMERGLRELESWKDVVSTRLDVLGRENDMLRYDVQRVGNDQASLENKEMAVLLISLFFMCFATIKLVSAKLSKFLGA SYSSSSSSTRPNKAHRADGGGGGGGGGWLMILVSSTMTIFITLLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23950			Galactose-binding protein (.1....		Lus10032405 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10012971 [exp]	4.9	0.8456
AT1G73240			unknown protein		Lus10042457 [exp]	5.3	0.8743
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10006339 [exp]	8.1	0.8382
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	17.0	0.8614
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Lus10028190 [exp]	19.6	0.8381
AT1G73240			unknown protein		Lus10026211 [exp]	23.2	0.8316
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	23.6	0.8230
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	24.5	0.8487
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10029779 [exp]	27.5	0.8171
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	28.7	0.8335

Compare expression of checked genes

Lus10032405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.