Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45890 391 / 3e-136 SAG12 senescence-associated gene 12 (.1) AT3G48340 371 / 3e-128 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT3G19390 371 / 5e-127 Granulin repeat cysteine protease family protein (.1) AT5G50260 367 / 8e-127 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT5G43060 354 / 2e-120 Granulin repeat cysteine protease family protein (.1) AT2G27420 348 / 3e-119 Cysteine proteinases superfamily protein (.1) AT3G48350 348 / 4e-119 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT4G35350 347 / 7e-119 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G47128 348 / 4e-118 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G49340 343 / 2e-117 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026073 [exp] 670 / 0 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10029799 [exp] 665 / 0 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10028502 [exp] 661 / 0 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10002301 [exp] 660 / 0 AT5G45890 397 / 1e-138 senescence-associated gene 12 (.1) Lus10020722 [exp] 659 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10026362 [exp] 659 / 0 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1) Lus10006542 [exp] 659 / 0 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10009145 [exp] 659 / 0 AT5G45890 396 / 4e-138 senescence-associated gene 12 (.1) Lus10020730 [exp] 658 / 0 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G088600 [exp] 551 / 0 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 550 / 0 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 545 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 545 / 0 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 544 / 0 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 541 / 0 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 493 / 1e-176 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.013G118200 [exp] 479 / 1e-171 AT5G45890 387 / 2e-135 senescence-associated gene 12 (.1) Potri.007G075100 [exp] 476 / 1e-170 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.013G126100 [exp] 472 / 2e-168 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10032406 pacid=23168515 polypeptide=Lus10032406 locus=Lus10032406.g ID=Lus10032406.BGIv1.0 annot-version=v1.0 ATGGCATGCAAATTCATTCTCTTGGCTTCCCTATTCATCCTAGGAGCTCTGGCTTCTTACGCCACGGCACGCTATACACTTCCTGAAGCTGCCGTGCGCC TTAGGTATGAGCAATGGATGACTCGTTATGGAAGAGTCTACGAAAGCCCCGCTGAAAAGGAGGCTCGCTTTCACATCTTCAAAGACAATGTAGCTTTCAT CGACTCTTCCAATGCTGATGGAAACAAGTCATACAAACTTGGAGTCAATCAGTTTGCGGATTTGACCAACGACGAGTTCAAAGCCTCTAGAAACGGGTTC AAGGGACACATGTGCGCTCCGCAACACGGACCTTTTAGGTATGAAAATGTGAGCGCAGTTCCAACGACCATGGACTGGAGGAAGAAGGGGGCGGTCACTC CAATCAAAGACCAAGGCCAATGCGGAAGCTGCTGGGCATTCTCGGCCGTGGGGGCAATGGAAGGAATCCACCAGCTCAGTACTGGAAAATTGGTGTCGCT TTCAGAGCAGGAATTGGTTGACTGCGACACCAAGGGAGAAGACCAAGGATGCAGCGGCGGGTTGATGGACGATGCGTTCAAGTTCATCATTCAAAACAAG GGCTTGACCACCGAGACCAACTACCCTTACGACGCAGCTGATGGAACCTGTAATGCTAACAAAGAAGGAAGCACCGCAGCCAAGATTACGGGGTACGAAG ATGTGCCAGCCAACAACGAGGCCGCATTGATGAAGGCGGTAGCTAGTCAGCCTATTTCGGTCGCTATTGATGCAGGGGACTCGTCGTTCCAATTCTACTC GAGTGGAATATTCACCGGGGAATGTGGAACTGAACTGGATCATGGAGTTACTGCTGTTGGGTATGGAGAGAGCGGTGGGAAGAAGTACTGGTTGGTGAAG AATTCGTGGGGAGCTCAGTGGGGCGAAGCCGGATATATTCGGATGCAGAAAGATGTTAGTGCTAAAGAAGGTCTCTGCGGAATTGCTATGCAGGCTTCCT ATCCTACTGCTTGA
AA sequence Show only first row Show all	>Lus10032406 pacid=23168515 polypeptide=Lus10032406 locus=Lus10032406.g ID=Lus10032406.BGIv1.0 annot-version=v1.0 MACKFILLASLFILGALASYATARYTLPEAAVRLRYEQWMTRYGRVYESPAEKEARFHIFKDNVAFIDSSNADGNKSYKLGVNQFADLTNDEFKASRNGF KGHMCAPQHGPFRYENVSAVPTTMDWRKKGAVTPIKDQGQCGSCWAFSAVGAMEGIHQLSTGKLVSLSEQELVDCDTKGEDQGCSGGLMDDAFKFIIQNK GLTTETNYPYDAADGTCNANKEGSTAAKITGYEDVPANNEAALMKAVASQPISVAIDAGDSSFQFYSSGIFTGECGTELDHGVTAVGYGESGGKKYWLVK NSWGAQWGEAGYIRMQKDVSAKEGLCGIAMQASYPTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	0	1
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	1.4	0.9368
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	3.5	0.9196
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	4.2	0.9241
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	4.5	0.9076
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10042907 [exp]	4.9	0.8915
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	5.3	0.9043
					Lus10018424 [exp]	8.2	0.8607
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	8.5	0.9310
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	13.0	0.8910
					Lus10036060 [exp]	15.9	0.8410

Compare expression of checked genes

Lus10032406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.