Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10925 336 / 2e-117 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) AT4G23960 152 / 1e-46 F-box family protein (.1) AT4G23970 67 / 4e-14 unknown protein AT3G09250 67 / 8e-13 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023064 [exp] 481 / 6e-174 AT4G10925 333 / 5e-116 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10001815 [exp] 360 / 6e-127 AT4G10925 317 / 4e-111 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10003192 [exp] 211 / 4e-69 AT4G10925 187 / 2e-60 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10021504 [exp] 68 / 5e-13 AT3G09250 272 / 2e-92 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10022605 [exp] 65 / 1e-12 AT3G09250 265 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089600 [exp] 360 / 1e-125 AT4G10925 347 / 2e-121 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.003G141600 [exp] 353 / 3e-123 AT4G10925 350 / 9e-123 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.006G093700 [exp] 73 / 1e-14 AT3G09250 266 / 5e-89 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.016G105600 [exp] 72 / 2e-14 AT3G09250 281 / 4e-96 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032407 pacid=23168677 polypeptide=Lus10032407 locus=Lus10032407.g ID=Lus10032407.BGIv1.0 annot-version=v1.0 ATGGAGATTATCCCCAACTTCTCTTCTCAAGCTTTCCTCATAGCCTCCTCCTTCACTCTCATCTCCCTCGTGCTAACTCTCCTCTCTATTCGACACTTGA AATCGGCCGATAAATTGCCTTCGTCGTCGTTCAGGTGCAGGGTTTGTAATTCTGGGTGCTCCGGTGACGGGACCGTCGGAAATTCCGTTAACAAGGGAGG CGAAGCTGCGGCGGAGATGGTAGTGGCTGCTCGAGAAGGAACTGGAATGGAGAGGCAGTGTGGTGCGTCGATGATGGAGCAGCTGGTTCCTGAGATAACG ACGCATGCGCTGAGTTATTTGGATTACCCGAGTCTGTGTAGATTGTCCATGACTAATTCGTTGATGCGGAAGGCTGCTAATGACGACAATGCTTGGAAAG CTCTGTATCACAAGGATTTCACGTTGGAACAAGATACTGTTACACCTGTTAATGGATGGAAAGCTTACTATGCAGCTACAAGAGCCATTGTCAATCTGAA TGCAGAATTTTTCAACATTATCAGAGAAAGTAGTCTTCAGGATATGAGCCGTCTTTGGCTTAATGCAGATTATGTGAAATGCGTTCATGCATCAGGAGAA CTCTTTTCAGGGTACAACGTGGTTATACAGAGTTGGCAGCTGGCATTCAACTGGGAGCAAGGAGTGGACTTCCTGGTACGAGATGTAGGAGTTCGAGTCC TGACTGACATAGCTTGGGTTAGCATGAAGACATATGTTGACGTGGACACAGGGCCATTTCACGTAACGAACGTGTTTGAGTTCCACAACGGAAGGTGGTA CATGGTGCATCATCACAGTTCAGTTGATCATCAGATTATGCACCCGTAA
AA sequence Show only first row Show all	>Lus10032407 pacid=23168677 polypeptide=Lus10032407 locus=Lus10032407.g ID=Lus10032407.BGIv1.0 annot-version=v1.0 MEIIPNFSSQAFLIASSFTLISLVLTLLSIRHLKSADKLPSSSFRCRVCNSGCSGDGTVGNSVNKGGEAAAEMVVAAREGTGMERQCGASMMEQLVPEIT THALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAYYAATRAIVNLNAEFFNIIRESSLQDMSRLWLNADYVKCVHASGE LFSGYNVVIQSWQLAFNWEQGVDFLVRDVGVRVLTDIAWVSMKTYVDVDTGPFHVTNVFEFHNGRWYMVHHHSSVDHQIMHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10925			Nuclear transport factor 2 (NT...		Lus10032407 [exp]	0	1
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	4.2	0.8131
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	7.7	0.7912
AT2G02148			unknown protein		Lus10035090 [exp]	9.2	0.7655
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	10.0	0.7851
					Lus10032730 [exp]	13.2	0.6854
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10001726 [exp]	16.7	0.7087
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	22.2	0.7870
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	23.2	0.7645
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	25.3	0.7531
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	26.1	0.7258

Compare expression of checked genes

Lus10032407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.