Plant FIBer expression Database

Lus10032408 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42070 118 / 4e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023063
[exp]
215 / 3e-72 AT5G42070 122 / 4e-36 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G089500
[exp]
137 / 1e-41 AT5G42070 128 / 5e-38 unknown protein
Potri.003G141700
[exp]
134 / 3e-40 AT5G42070 129 / 2e-38 unknown protein
PFAM info
Representative CDS sequence
>Lus10032408 pacid=23168567 polypeptide=Lus10032408 locus=Lus10032408.g ID=Lus10032408.BGIv1.0 annot-version=v1.0
ATGGCGCTCCCTTTGGTCTCAGTTCCAACGCCTCATCCTCACACTCCCAAACTAACCTGGTTCCGTACCCCGCAACCTCCGTCCCATAACCTCTTCCTCC
TCCGTCTTTCTTCTTCAAATTCCGTTTTGGAAACAGATGGCCCTTCTTCAACAGATGGTCTTTTGGAAACTCCCGTCCAAGATTCAGCTACCAAACCTTT
TCCTCTCAGTGGATGTAAGGCGTGTGGGAAGGAAGAGATAGAGAAGGGATGCAACGGGGAAGGAAGGATTCAAGGTGGGATAGCTACTGTACCTGGGTTT
GGTTGGTGGCCAATCAAGGCTTATCGCCCTTGCCCGGGGTTTGTGGCTTCCGGTGGCCGTTACTACCGGCAAGGCCAAAGCATGGACGAGGTTGTCTCAG
GCGGGGGCGGTGGAAGACGAGTGCCCATTCCTACTCCTTCCCCTTCCTCCTCCTCCTCCTCCTCCCAAACCGTGTCCTCCAACCCCAGCAGCAAGAAAAA
GAGTGGCCCCAGGAAGTTCAAGCGGTGA
AA sequence
>Lus10032408 pacid=23168567 polypeptide=Lus10032408 locus=Lus10032408.g ID=Lus10032408.BGIv1.0 annot-version=v1.0
MALPLVSVPTPHPHTPKLTWFRTPQPPSHNLFLLRLSSSNSVLETDGPSSTDGLLETPVQDSATKPFPLSGCKACGKEEIEKGCNGEGRIQGGIATVPGF
GWWPIKAYRPCPGFVASGGRYYRQGQSMDEVVSGGGGGRRVPIPTPSPSSSSSSSQTVSSNPSSKKKSGPRKFKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42070 unknown protein Lus10032408
[exp]
0 1
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Lus10005581
[exp]
3.7 0.9316
AT4G20360 AtRab8D, AtRABE... RAB GTPase homolog E1B (.1) Lus10043342
[exp]
4.0 0.9308
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Lus10018218
[exp]
5.7 0.9284
AT2G48070 RPH1 resistance to phytophthora 1 (... Lus10029632
[exp]
6.3 0.9107
AT1G54350 ABCD2 ATP-binding cassette D2, ABC t... Lus10001758
[exp]
8.5 0.9048
AT3G08010 ATAB2 RNA binding (.1) Lus10029507
[exp]
8.7 0.9283
AT3G18890 AtTic62 translocon at the inner envelo... Lus10026321
[exp]
8.9 0.9177
AT1G17220 FUG1 fu-gaeri1, Translation initiat... Lus10013713
[exp]
9.5 0.9195
AT5G58140 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LI... Lus10013856
[exp]
15.2 0.9027
AT2G28800 ABL3, ALB3 ALBINO 3, 63 kDa inner membran... Lus10016570
[exp]
17.3 0.9178

Lus10032408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.