Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10920 149 / 2e-46 KELP transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) AT5G09250 72 / 7e-17 KIWI ssDNA-binding transcriptional regulator (.1.2) AT4G00980 68 / 1e-13 zinc knuckle (CCHC-type) family protein (.1) AT5G09240 61 / 1e-12 ssDNA-binding transcriptional regulator (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023061 [exp] 200 / 1e-66 AT4G10920 132 / 7e-40 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10030245 [exp] 113 / 2e-32 AT4G10920 136 / 3e-41 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10003998 [exp] 97 / 7e-24 AT4G00980 226 / 9e-68 zinc knuckle (CCHC-type) family protein (.1) Lus10013733 [exp] 77 / 9e-19 AT5G09250 139 / 2e-44 ssDNA-binding transcriptional regulator (.1.2) Lus10039207 [exp] 70 / 6e-16 AT5G09250 125 / 1e-38 ssDNA-binding transcriptional regulator (.1.2) Lus10032409 [exp] 47 / 3e-07 AT5G42060 58 / 2e-12 DEK, chromatin associated protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089400 [exp] 167 / 1e-53 AT4G10920 152 / 5e-48 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Potri.002G171900 [exp] 107 / 8e-28 AT4G00980 373 / 7e-125 zinc knuckle (CCHC-type) family protein (.1) Potri.007G101100 [exp] 71 / 2e-16 AT5G09250 115 / 7e-35 ssDNA-binding transcriptional regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain CL0609 [flax] [poplar] sPC4_like PF02229 [flax] [poplar] PC4 Transcriptional Coactivator p15 (PC4)
Representative CDS sequence Show only first row Show all	>Lus10032410 pacid=23168496 polypeptide=Lus10032410 locus=Lus10032410.g ID=Lus10032410.BGIv1.0 annot-version=v1.0 ATGGATTCCAAAACGAAGATCGACATCGAGAAAAGCGTACGCAAAATCATCGAGGAATCCGACATGACCTCCACCACCGAGTCCCAGATTCGCAAGAGGG CGTCCCAGGAGCTGGGACTCGACCTCAATAAACCCGAGTTCAAGGCCCACGTCAGGCATGTCGTCAACAAATTTCTACAGGAAGCTGCTGAAAAGGAGCA GGAAAAGGAAGAAGCTGAAGCAGAAGCAGATGATGGGGGTGAGGGTCAACAAGCTGCTGGTGGCGTGGAGTATGACGATGATGGTGATCTCATCATTTGC AGGTTAACGTCCAAGAGGAGGGTGACTATTCAGAATTTCAGAGGGAGGAACTTGGTATCGATAAGGGAGTTCTACAGTAAGGATGGGAAAGAACTTCCAA CTTCCAAAGGTATAAGTCTAACAGATCAGCAGTGGACAGTATTAAGCAAGAACATGGACGCCGTAGACAAAGCCATAACAAAGATGCAGGACTACTAA
AA sequence Show only first row Show all	>Lus10032410 pacid=23168496 polypeptide=Lus10032410 locus=Lus10032410.g ID=Lus10032410.BGIv1.0 annot-version=v1.0 MDSKTKIDIEKSVRKIIEESDMTSTTESQIRKRASQELGLDLNKPEFKAHVRHVVNKFLQEAAEKEQEKEEAEAEADDGGEGQQAAGGVEYDDDGDLIIC RLTSKRRVTIQNFRGRNLVSIREFYSKDGKELPTSKGISLTDQQWTVLSKNMDAVDKAITKMQDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10920		KELP	transcriptional coactivator p1...		Lus10032410 [exp]	0	1
AT2G41705			camphor resistance CrcB family...		Lus10025622 [exp]	9.9	0.8346
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	20.2	0.8478
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10024082 [exp]	27.5	0.8259
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10004692 [exp]	31.1	0.8420
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10007031 [exp]	36.0	0.8343
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10022626 [exp]	53.4	0.8329
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	70.4	0.8104
					Lus10021189 [exp]	71.6	0.8234
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	72.0	0.8215
AT5G47090			unknown protein		Lus10035063 [exp]	74.8	0.8247

Compare expression of checked genes

Lus10032410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.