Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23980 488 / 2e-170 ARF ARF9 auxin response factor 9 (.1.2) AT2G46530 476 / 1e-166 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 469 / 1e-163 ARF ARF18 auxin response factor 18 (.1) AT1G59750 450 / 2e-155 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G62000 441 / 2e-149 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G35540 379 / 3e-128 ARF ARF14 auxin response factor 14 (.1) AT1G34410 373 / 4e-126 ARF ARF21 auxin response factor 21 (.1) AT1G35520 369 / 2e-124 ARF ARF15 auxin response factor 15 (.1) AT1G34390 365 / 8e-123 ARF ARF22 auxin response factor 22 (.1) AT1G34310 364 / 9e-123 ARF ARF12 auxin response factor 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023058 [exp] 629 / 0 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10007440 [exp] 455 / 7e-157 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 453 / 2e-156 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10043200 [exp] 437 / 4e-148 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 437 / 4e-148 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10030240 [exp] 346 / 5e-117 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10041340 [exp] 328 / 7e-110 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10005264 [exp] 306 / 5e-99 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10013942 [exp] 303 / 3e-98 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142100 [exp] 537 / 0 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.014G100100 [exp] 524 / 0 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 510 / 2e-178 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 501 / 4e-175 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.003G001000 [exp] 457 / 3e-158 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.004G228800 [exp] 456 / 8e-158 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.012G106100 [exp] 441 / 2e-149 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 434 / 7e-147 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 405 / 1e-136 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 382 / 2e-127 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032413 pacid=23168641 polypeptide=Lus10032413 locus=Lus10032413.g ID=Lus10032413.BGIv1.0 annot-version=v1.0 ATGGAGCAGTTGGAGGCATCCACAAATCAGGAACTGAATCAGAGAGCTCCTTTGTTCAATTTGCCGTCCAAGATTCTCTGTCGGGTCATTAACATTAATC TTCTGGCTGAACCAGAGACGGATGAAGTTTATGCACAGATAACTTTGATACCTGAACTTGATCAAAGTGAGCCAACCAGTCCCGATCTGTGCCCAACCGA GACTCCAAGGCCTTTGGTTCATTCGTTTTGTAAGGTCTTGACAGCATCGGATACAAGCACGCATGGTGGCTTTTCTGTACTCCGCAAACATGCAACTGAA TGCCTCCGTCCTTTGGACATGACTCAGCAAACACCAACTCAGGAATTGGTTGCAAAAGATCTTCATGGCTATGAGTGGAGGTTCAAGCATATCTTCCGAG GTCAGCCTCGGAGGCACTTGCTTACAACAGGCTGGAGTACGTTTGTGACATCCAAGAGATTAGTTGCTGGCGATTCGTTTGTTTTCCTCAGGGGAGAGAC TGGAGACCTCCGAGTTGGAGTGAGGCGGGTAGCTCTTCAACAAAGCAGCATGCCTACCTCTGTTATTTCTAGTCAGAGCATGCATCTTGGAGTTTTGGCA ACAGCTTCTCATGCCGTTGGGACTCAAACTATGTTTGTGGTCTATTATAAGCCAAGGACTAGCCAGTTCATCATTGGCCTGAACAGGTATTTGGAAGCAG TTGGTAATAAGTTTGCTGTCGGGAAGAGATTCAAGATGAGGTTTGAAGGCGAAGATTCCCCTGAGCGAAGGTTCTCTGGAACTATTGTTGGTGTTGACGA TTTCTCACCTTATTGGGCAGAGTCCAAATGGCGATGTTTGAAGGTTCAATGGGATGAACCTGCATCCATTCCAAGACCAGACAAGGTTTCACCATGGGAG ATAGAACCATTTGAGGCTTCTTGTACGACCAACACCGCTCCAACCACTCCCACCCTCCAATGA
AA sequence Show only first row Show all	>Lus10032413 pacid=23168641 polypeptide=Lus10032413 locus=Lus10032413.g ID=Lus10032413.BGIv1.0 annot-version=v1.0 MEQLEASTNQELNQRAPLFNLPSKILCRVININLLAEPETDEVYAQITLIPELDQSEPTSPDLCPTETPRPLVHSFCKVLTASDTSTHGGFSVLRKHATE CLRPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGETGDLRVGVRRVALQQSSMPTSVISSQSMHLGVLA TASHAVGTQTMFVVYYKPRTSQFIIGLNRYLEAVGNKFAVGKRFKMRFEGEDSPERRFSGTIVGVDDFSPYWAESKWRCLKVQWDEPASIPRPDKVSPWE IEPFEASCTTNTAPTTPTLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032413 [exp]	0	1
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	13.3	0.8105
AT5G49960			unknown protein		Lus10041014 [exp]	13.6	0.7837
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	14.1	0.7953
AT5G20660			Zn-dependent exopeptidases sup...		Lus10009230 [exp]	15.2	0.8314
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	20.5	0.8227
AT4G17020			transcription factor-related (...		Lus10041753 [exp]	31.2	0.7279
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10016513 [exp]	34.5	0.7847
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015886 [exp]	46.6	0.8086
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	57.0	0.7717
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	57.7	0.8010

Compare expression of checked genes

Lus10032413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.