Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23980 154 / 9e-43 ARF ARF9 auxin response factor 9 (.1.2) AT2G46530 134 / 5e-36 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 133 / 1e-35 ARF ARF18 auxin response factor 18 (.1) AT1G35540 122 / 2e-31 ARF ARF14 auxin response factor 14 (.1) AT1G34170 117 / 7e-30 ARF ARF13 AUXIN RESPONSE FACTOR 13 (.1.2.3) AT1G34410 115 / 4e-29 ARF ARF21 auxin response factor 21 (.1) AT1G34310 113 / 2e-28 ARF ARF12 auxin response factor 12 (.1) AT1G35240 112 / 5e-28 ARF ARF20 auxin response factor 20 (.1) AT1G34390 111 / 8e-28 ARF ARF22 auxin response factor 22 (.1) AT1G35520 111 / 1e-27 ARF ARF15 auxin response factor 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023058 [exp] 435 / 2e-150 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10024455 [exp] 119 / 2e-30 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10007440 [exp] 117 / 2e-29 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10043200 [exp] 107 / 3e-26 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 107 / 4e-26 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10022943 [exp] 87 / 5e-19 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10027600 [exp] 86 / 6e-19 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10031354 [exp] 82 / 3e-17 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10012421 [exp] 77 / 9e-16 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088600 [exp] 267 / 7e-85 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 243 / 8e-76 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.014G100100 [exp] 141 / 4e-38 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 135 / 5e-36 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2) Potri.004G228800 [exp] 114 / 8e-29 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 111 / 1e-27 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.001G066200 [exp] 104 / 4e-25 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 103 / 7e-25 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 100 / 7e-24 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 100 / 1e-23 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10032414 pacid=23168533 polypeptide=Lus10032414 locus=Lus10032414.g ID=Lus10032414.BGIv1.0 annot-version=v1.0 ATGATGTGGCAACATAAACAGGCTGATATTATCAGCCATGGAAGCTCTATTTCGAGAACTCAGACTGATGCAGGCTGGCTGTCTCCGCACATGAATGTCA ATCTGCATAACTTCCAGGACACCACTGAGGATACCAAGAGCGTCTCGAATTGGTCAGTTTCAAACTTTGCATCTCCCCAAGCTGCAAAACCGAAGAGTGA AGTTGCCAGTAGCTACAGGTTGTTTGGTATTGAGCTCATGAATAGTCCGATGAGTGCACCGATGACTGAGAAGACATTATCTAGTGGCACAACAGAAGTA CATGTACATAGTACCATCTCAGCTGCTGATCCTGACCAAAAAGCAGACTCTCCCAAGGAAAAGAAAACCGACCAATCTCAAGTGTCGCCAAAGGATACCC AGAGCAGGCAAAGTTCTGTATCGACCAGAAGCCGCACCAAGGGAGTTGCTGTTGGAAGAGCGGTAGACCTGACGACAATAAAAGGGTATCCTCAGCTGAT AAGTGAGCTGGAGAGTTTGTTTGATATCGAGGGACAGCTTCAGTTTCGCGACAAGTGGGAAATCGTCTACACTGACGACGAAGGAGACATGATGCTCGTC GGAGATGATCCATGGGTTGAATTCTGCAACATGGTGAGGAGAATCATCATATGTTCGAGTCAGGATGTGAAAAGGATGAGGAATCCAGGGAGCAAGAATC CCATGTTTGGAGTAGGAGGAGATGGAGGAGGAGCAGCTGTAGCAGTAAGCTCTGATTCAGCAGTGGAAAACTCCAAACAGTAG
AA sequence Show only first row Show all	>Lus10032414 pacid=23168533 polypeptide=Lus10032414 locus=Lus10032414.g ID=Lus10032414.BGIv1.0 annot-version=v1.0 MMWQHKQADIISHGSSISRTQTDAGWLSPHMNVNLHNFQDTTEDTKSVSNWSVSNFASPQAAKPKSEVASSYRLFGIELMNSPMSAPMTEKTLSSGTTEV HVHSTISAADPDQKADSPKEKKTDQSQVSPKDTQSRQSSVSTRSRTKGVAVGRAVDLTTIKGYPQLISELESLFDIEGQLQFRDKWEIVYTDDEGDMMLV GDDPWVEFCNMVRRIIICSSQDVKRMRNPGSKNPMFGVGGDGGGAAVAVSSDSAVENSKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032414 [exp]	0	1
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	12.0	0.9226
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	13.4	0.9168
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	14.9	0.9230
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	15.0	0.9277
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	16.7	0.9268
AT4G22310			Uncharacterised protein family...		Lus10023745 [exp]	19.3	0.9256
AT1G21780			BTB/POZ domain-containing prot...		Lus10042717 [exp]	19.6	0.9041
AT3G09010			Protein kinase superfamily pro...		Lus10001212 [exp]	19.7	0.9060
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017705 [exp]	20.8	0.9147
AT5G49710			unknown protein		Lus10000765 [exp]	21.8	0.9257

Compare expression of checked genes

Lus10032414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.