Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23990 736 / 0 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24010 705 / 0 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT4G24000 697 / 0 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT1G55850 396 / 2e-127 ATCSLE1 cellulose synthase like E1 (.1) AT2G32530 288 / 3e-86 ATCSLB3, ATCSLB03 cellulose synthase-like B3 (.1) AT4G15290 279 / 9e-83 ATCSLB5, ATCSLB05 CELLULOSE SYNTHASE LIKE 5, Cellulose synthase family protein (.1) AT2G32620 277 / 3e-82 ATCSLB2, ATCSLB02 CELLULOSE SYNTHASE LIKE B2, cellulose synthase-like B (.1) AT2G32540 277 / 4e-82 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) AT1G32180 273 / 3e-79 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT2G32610 257 / 1e-74 ATCSLB1, ATCSLB01 CELLULOSE SYNTHASE LIKE B1, cellulose synthase-like B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023057 [exp] 1244 / 0 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 946 / 0 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023056 [exp] 702 / 0 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10016625 [exp] 431 / 2e-140 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10006161 [exp] 283 / 3e-82 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10000755 [exp] 271 / 3e-78 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10011736 [exp] 213 / 3e-58 AT2G33100 1508 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10007296 [exp] 207 / 6e-56 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10039607 [exp] 207 / 6e-56 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142500 [exp] 884 / 0 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142400 [exp] 866 / 0 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.006G004300 [exp] 429 / 5e-140 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.010G074700 [exp] 427 / 3e-139 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.001G369100 [exp] 426 / 7e-139 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.010G074800 [exp] 405 / 7e-131 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.002G227300 [exp] 337 / 1e-104 AT2G32540 712 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.014G155300 [exp] 314 / 6e-96 AT2G32540 711 / 0.0 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1) Potri.006G004166 [exp] 236 / 4e-71 AT1G55850 429 / 1e-145 cellulose synthase like E1 (.1) Potri.004G208800 [exp] 252 / 5e-71 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10032415 pacid=23168528 polypeptide=Lus10032415 locus=Lus10032415.g ID=Lus10032415.BGIv1.0 annot-version=v1.0 ATGGAGGCTAACGGAACCACCGGCCGTCGTAACCCCGCCGCCCTCCACACGGCGGAGGCCTGGCCGATCACCACCTTCAACCGCCTCTTCGCGCCGATCT ACCTATTCGCCATCCTAGCTCTCTTCTACCACCACATAACAAACCTCCACCTCCAATACTCCACGTCATCTTCCTCCTTCCTCATCACGCTGACCTTGCT CCTCGCTGACGTGGCACTGGCCTTCATGTGGGCCGCCACCCAGGTCTTCCGGATGAACCCGATACGACGCCGCGAGACCCCGCGTAACTTGGACGGCGTC GTTTCGAGGGAGGACCTGCCCGGGCTGGACGTGTTCATCTGCACGGCGGACCCGTACAAGGAGCCGCCGATCGGGGTGGTGAACACGGCGCTGTCGGTGA TGGGCTACGATTACCCCAAGGACAAGCTGGCGGTGTATGTCTCCGACGACGGAGGGTCCCAGTTGACCCTCTTTGCGTTTGTGGAGGCGGCGAAGTTTGC GGCCGTGTGGCTGCCGGTTTGTGAGAGGAACCGGGTGGTGGAGCGGAACCCGGCGGCTTACTTCGAATCCGGTGATTTTGGTTCTTCGTCCGGCGAGGCT GAGGAAATTAAGGAGATGTACGAGAGCATGAAGGCGAAGGTGGAGCATGTTTTGGAGAGAGGCAACGTAGATGATAAGTACATCAACGGTCCCAAAGAAG AGCAAGCTTTCGGCAAATGGACTCCCAATTTCACAAAACAGGACCACCCTTCGGTCATTCAGGTGTTGGTGGAGAGTGGCAAAGACAAAGACGTGGATGG GCAAATAATGCCAAACCTCATTTACCTCTCGAGGCAGAAAAGCAAGTCTTCTCCACATCACTTCAAAGCTGGCGCCCTCAATGTTTTGCTACGTGTGTCG GCTGCTATGACCAACGCCCCAATAATACTGACCTTGGACTGCGACATGTACTCCAATGATCCCGCTACACCACTCCGCACCATGTGCTACTTCTGCGACC CGAAACTCGGATCTGAAAACTCGACTTACGTTCAGTTCCCTCAGAAGTACCGCGGGATTAATAAGAACGACATCTATGCCGGGGAATATGCGCGATTGTT TGTCATTCAAGCGATGGGGTTCGATGGGTTGCACGGTCCTAACCATGTTGGAACCGGCTGCTTTTTTCGTCGGAGAGTCTTCTTCGGTGGGCCGTCTAAT CCGGTGCCCGTTGAGATTCCCGAGCTGGAGCCTAGCTATTTTGTAAGAGATTCGGTTCAGTCGGGTTCGGTTTTGGGTTTGGCGCATGAGGTTTCGAGTT GCGACTATGAGAATCGAACCGGTTGGGGTTCTAAGATTGGGTTCAGGTATGGGTCGTTGGTGGAAGATTACTACACAGGTTACAGGCTACACTGTGAAGG ATGGAGATCAGTCTTCTGTTGTCCAGATAGACCCGCGTTTCTCGGGGATGCCCCGATCTCATTGGTGGATATGATTAATCAGCAGAAGAGATGGGACATT GGGCTTCTTGAGGTGGCCTTTTGTAAATTCAGCACTCTGACCCACGGAGTTAAGCGGGCCGGATTTCTCGTGGGCCTTGGATACTCTCAGTATGCATTTT GGCCCGTTTGGTCCATCCCTCTCCTCGTTTACTCCTTCATTCCCCAGCTCGCTCTCCTCAATAATGTCCACATCTTCCCAAAGGCAACAGAGCCATGGTT TTGGCTATACCCATTCCTCTTCCTAGGAGCATACGCTCAAGACCTTCTAGACTTCCTCATCGTCGGCGGCACCGTCCCAAAATGGTGGAGCGACCAAAGA ATCTGGCTCCTACGCGGGCTGACGTGTCACCTCTTCGGCTCACTCGAGTACTTCCTCAAATTTATAGGAATAGCCGCCGGATTCAACGTGACAAGCAAAG TAGTGGACGAGGAACAGAGCAAGAGATACGACCAGGGGATCTTCGAGTTCGGCGTCCATTCCCCTATGTTCGTTCCCCCCACCGTGGCGGCGCTGATCAA CTTGCTGGCGCTCCTCCACGGCGTGGTTACTACCCTCATTGTTCAACGTGGCGGAGTGGTGGACGCGCCGGTTGTGCAGGTGTTGGTGGCAGGGTTTGGG GTGGTGAACTGTTGGCCGATTTATGAAGCTGTGGGTTTCAGGAATGACAAGGGGAGAATGCCTTTGAAGACCACGGTTATGTCGGTGGCGTTGGCTTTGG CTTGCTACGTCGTTGCTCCGTTGGTTCTCAGATGA
AA sequence Show only first row Show all	>Lus10032415 pacid=23168528 polypeptide=Lus10032415 locus=Lus10032415.g ID=Lus10032415.BGIv1.0 annot-version=v1.0 MEANGTTGRRNPAALHTAEAWPITTFNRLFAPIYLFAILALFYHHITNLHLQYSTSSSSFLITLTLLLADVALAFMWAATQVFRMNPIRRRETPRNLDGV VSREDLPGLDVFICTADPYKEPPIGVVNTALSVMGYDYPKDKLAVYVSDDGGSQLTLFAFVEAAKFAAVWLPVCERNRVVERNPAAYFESGDFGSSSGEA EEIKEMYESMKAKVEHVLERGNVDDKYINGPKEEQAFGKWTPNFTKQDHPSVIQVLVESGKDKDVDGQIMPNLIYLSRQKSKSSPHHFKAGALNVLLRVS AAMTNAPIILTLDCDMYSNDPATPLRTMCYFCDPKLGSENSTYVQFPQKYRGINKNDIYAGEYARLFVIQAMGFDGLHGPNHVGTGCFFRRRVFFGGPSN PVPVEIPELEPSYFVRDSVQSGSVLGLAHEVSSCDYENRTGWGSKIGFRYGSLVEDYYTGYRLHCEGWRSVFCCPDRPAFLGDAPISLVDMINQQKRWDI GLLEVAFCKFSTLTHGVKRAGFLVGLGYSQYAFWPVWSIPLLVYSFIPQLALLNNVHIFPKATEPWFWLYPFLFLGAYAQDLLDFLIVGGTVPKWWSDQR IWLLRGLTCHLFGSLEYFLKFIGIAAGFNVTSKVVDEEQSKRYDQGIFEFGVHSPMFVPPTVAALINLLALLHGVVTTLIVQRGGVVDAPVVQVLVAGFG VVNCWPIYEAVGFRNDKGRMPLKTTVMSVALALACYVVAPLVLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	0	1
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	1.0	0.9421
					Lus10031407 [exp]	3.5	0.9399
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039349 [exp]	4.9	0.9291
AT3G50770		CML41	calmodulin-like 41 (.1)		Lus10032734 [exp]	5.5	0.9190
AT1G70505			unknown protein		Lus10030895 [exp]	5.9	0.9210
					Lus10021373 [exp]	6.0	0.9395
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	6.7	0.9032
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039743 [exp]	7.5	0.9199
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10007777 [exp]	7.5	0.9036
					Lus10011553 [exp]	8.1	0.9235

Compare expression of checked genes

Lus10032415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.