Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24010 97 / 5e-24 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT4G24000 97 / 9e-24 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G23990 93 / 2e-22 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT1G55850 66 / 5e-13 ATCSLE1 cellulose synthase like E1 (.1) AT4G38190 59 / 8e-11 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT3G03050 59 / 9e-11 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT1G02730 59 / 9e-11 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT4G15320 59 / 1e-10 ATCSLB6, ATCSLB06 CELLULOSE SYNTHASE LIKE B6, cellulose synthase-like B6 (.1) AT2G25540 59 / 1e-10 CESA10 cellulose synthase 10 (.1) AT2G32540 58 / 3e-10 ATCSLB4, ATCSLB04 CELLULOSE SYNTHASE LIKE B4, cellulose synthase-like B4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023056 [exp] 170 / 1e-49 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10032415 [exp] 110 / 1e-28 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 103 / 5e-26 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 87 / 2e-20 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10016625 [exp] 65 / 1e-12 AT1G55850 801 / 0.0 cellulose synthase like E1 (.1) Lus10026610 [exp] 64 / 2e-12 AT3G03050 1028 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 63 / 7e-12 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 62 / 8e-12 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 61 / 3e-11 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142201 [exp] 116 / 6e-33 AT4G24010 200 / 1e-59 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.003G142400 [exp] 121 / 1e-32 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142500 [exp] 114 / 8e-30 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.010G074800 [exp] 76 / 1e-16 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.001G449301 [exp] 69 / 2e-14 AT3G03050 482 / 1e-161 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G369100 [exp] 69 / 2e-14 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.006G004300 [exp] 68 / 7e-14 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.010G074700 [exp] 67 / 1e-13 AT4G24010 469 / 2e-155 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) Potri.006G004166 [exp] 66 / 3e-13 AT1G55850 429 / 1e-145 cellulose synthase like E1 (.1) Potri.001G136200 [exp] 62 / 6e-12 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10032416 pacid=23168670 polypeptide=Lus10032416 locus=Lus10032416.g ID=Lus10032416.BGIv1.0 annot-version=v1.0 ATGGGTTTTATCGCTTCTCCGACCAAGCTCCCACCTCTCCACCAACTCCGGCCACTCCCTCACGCCGTCATCAACCGACGCTTCGCCGCACTCTACGCTT CCGCCATCTTAGCCTTACTGGACCACCACACCACGTCACTCATCTTCCACCACAAAACCTCCCTATCCATAACCTTACTACACATCGCCTTCCTAATATC CGACCTCGTACTGGCCTTCATGTGGCTCACCGCTCAGGCCCTCCGCATGTTCCCCGTTCGCCGGGAACAGTTCCCGGCCAACCTCGAGAAGGTCGATCGC AATGAGTTCCCTGCCCTGGAAGTGTTCATATGCACGGCGGATCCGTACAAGGAGCCGCCGTTGAGGGTGGTGGACACGGACATGTCGGTGCTGGCGTACG TGTACCCGGCGGAGAAGCTGTCGGTGTACGTGTCGGACGTTGACTCTGTTTGTGTTCATGGATGCTGCTAA
AA sequence Show only first row Show all	>Lus10032416 pacid=23168670 polypeptide=Lus10032416 locus=Lus10032416.g ID=Lus10032416.BGIv1.0 annot-version=v1.0 MGFIASPTKLPPLHQLRPLPHAVINRRFAALYASAILALLDHHTTSLIFHHKTSLSITLLHIAFLISDLVLAFMWLTAQALRMFPVRREQFPANLEKVDR NEFPALEVFICTADPYKEPPLRVVDTDMSVLAYVYPAEKLSVYVSDVDSVCVHGCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	0	1
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	1.0	0.9421
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	1.4	0.9387
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	2.0	0.9120
AT3G50770		CML41	calmodulin-like 41 (.1)		Lus10032734 [exp]	2.4	0.9210
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10007777 [exp]	4.2	0.9063
AT1G70505			unknown protein		Lus10030895 [exp]	8.9	0.9099
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10024360 [exp]	13.9	0.8463
AT3G14260			Protein of unknown function (D...		Lus10008485 [exp]	15.0	0.8310
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019669 [exp]	20.1	0.8351
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	21.8	0.8930

Compare expression of checked genes

Lus10032416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.