Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23990 78 / 4e-18 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) AT4G24000 71 / 2e-15 ATCSLG2 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) AT4G24010 62 / 2e-12 CSLG2, ATCSLG1 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, cellulose synthase like G1 (.1) AT1G55850 38 / 0.0006 ATCSLE1 cellulose synthase like E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023056 [exp] 185 / 5e-56 AT4G23990 776 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10032415 [exp] 87 / 3e-21 AT4G23990 813 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10023057 [exp] 87 / 6e-21 AT4G23990 816 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Lus10003196 [exp] 75 / 9e-17 AT4G23990 815 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142400 [exp] 94 / 9e-24 AT4G23990 850 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.003G142500 [exp] 93 / 3e-23 AT4G23990 809 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, cellulose synthase like G3 (.1) Potri.010G074800 [exp] 59 / 3e-11 AT4G24000 471 / 2e-156 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, cellulose synthase like G2 (.1) Potri.006G004300 [exp] 55 / 6e-10 AT1G55850 762 / 0.0 cellulose synthase like E1 (.1) Potri.001G369100 [exp] 52 / 5e-09 AT1G55850 887 / 0.0 cellulose synthase like E1 (.1) Potri.006G004232 [exp] 50 / 2e-08 AT1G55850 284 / 1e-90 cellulose synthase like E1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032417 pacid=23168606 polypeptide=Lus10032417 locus=Lus10032417.g ID=Lus10032417.BGIv1.0 annot-version=v1.0 ATGTGGATCGTAAGAGGCCTCTCCTGTTCCCTGTTCGGAGGATTCCACTTCCTCCTCAACTCACTGGGCATCTCCCAGCAGAATAGTTTCAGCCTTACCA GCAAAGTCACGGACGAAGAACAGAGCAAGAGGTACGACAGGGGCATGTTCGAGTTCGGCGCCGCAGAGTCCCCGATCTTCGTGCCGATGACGGCGGCGGC TCTGATCAGTTTGCTCTCTTTCGTGGTCGGAGTTTGCAAAATTAGTGGGTGGAGATCAGGAGATGTGGATGGGTTGCTGATTCAGATTCTGTTGTCCGGG TTTGGTATGAAGCTATGGTTTTGA
AA sequence Show only first row Show all	>Lus10032417 pacid=23168606 polypeptide=Lus10032417 locus=Lus10032417.g ID=Lus10032417.BGIv1.0 annot-version=v1.0 MWIVRGLSCSLFGGFHFLLNSLGISQQNSFSLTSKVTDEEQSKRYDRGMFEFGAAESPIFVPMTAAALISLLSFVVGVCKISGWRSGDVDGLLIQILLSG FGMKLWF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032417 [exp]	0	1
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10019028 [exp]	8.2	0.7859
					Lus10017454 [exp]	9.4	0.7725
AT1G11360			Adenine nucleotide alpha hydro...		Lus10039730 [exp]	10.2	0.7595
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	16.3	0.7781
AT5G01210			HXXXD-type acyl-transferase fa...		Lus10035519 [exp]	19.7	0.7763
AT1G53540			HSP20-like chaperones superfam...		Lus10040830 [exp]	20.7	0.7696
AT2G46490			unknown protein		Lus10019579 [exp]	20.8	0.7314
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	33.5	0.7671
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	37.1	0.7505
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	39.8	0.7544

Compare expression of checked genes

Lus10032417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.