Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64510 232 / 1e-77 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023054 [exp] 392 / 3e-140 AT1G64510 234 / 2e-78 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088300 [exp] 248 / 8e-84 AT1G64510 263 / 3e-90 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01250 [flax] [poplar] Ribosomal_S6 Ribosomal protein S6
Representative CDS sequence Show only first row Show all	>Lus10032419 pacid=23168676 polypeptide=Lus10032419 locus=Lus10032419.g ID=Lus10032419.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCAGCAGTTTCGTCTACTCTATTCTACTCCCCAATTTTCTCCAAATCTCTCTCGAAGTCCAACCCGTCACCGTCTTCAGCATTTTTCCGGC GGTTTAATGCTAATGCGACGGAAATTGTCCACCGTGTAAGAGACCGCGAAGGCGTGGTGAAGGCACAGACATTCGATTTCTCTGGTTCGTTCTATGGAGG GAGGTTTGCCTCCGACGACGACGACGATGACGACCAGGAACCTCCGATGGAGGGCACCCTGTTGGAAATGGAGGAGAGAGAGACCCCTCCTTGCCCGCCT GGGCTGCGGCAGTACGAGACCATGGCTGTGTTGAGGCCGGACATGTCTGAAGATGAACGGCTTGCTCTTACTCAGAAGTACGAAGAGTTGCTTGTAGCTG GGGGTGGGATGTATGTGGAGGCATTCAACAGAGGAGTGCTTCCACTATCCTACAGCATCAAGAAGAAGAACAAAGCTGGTGAAACCAACACCTATATGGA TGGGATCTACCTCCTCTTCACTTACTTCACAAAACCAGAATCCTTGAACGCCCTCGAAACAACGATGAATACCGACGATGACGTGATCCGACACAGCACT TTCAAAATCAGGAAGAGGAAGATAGATCTTCCCTATGAATCCGATGAATACGCTACTGAGGTAGAGGCTGGACTATGA
AA sequence Show only first row Show all	>Lus10032419 pacid=23168676 polypeptide=Lus10032419 locus=Lus10032419.g ID=Lus10032419.BGIv1.0 annot-version=v1.0 MASSAVSSTLFYSPIFSKSLSKSNPSPSSAFFRRFNANATEIVHRVRDREGVVKAQTFDFSGSFYGGRFASDDDDDDDQEPPMEGTLLEMEERETPPCPP GLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEAFNRGVLPLSYSIKKKNKAGETNTYMDGIYLLFTYFTKPESLNALETTMNTDDDVIRHST FKIRKRKIDLPYESDEYATEVEAGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	0	1
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Lus10025445 [exp]	1.7	0.9725
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	2.0	0.9659
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	2.0	0.9733
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	2.2	0.9772
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	5.5	0.9633
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	5.9	0.9625
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016728 [exp]	7.5	0.9522
AT1G01080			RNA-binding (RRM/RBD/RNP motif...		Lus10030194 [exp]	8.7	0.9456
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	9.5	0.9510
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	11.2	0.9563

Compare expression of checked genes

Lus10032419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.