Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49290 146 / 8e-42 ABIL2 ABL interactor-like protein 2 (.1.2) AT5G24310 133 / 1e-36 ABIL3 ABL interactor-like protein 3 (.1.2) AT5G42030 121 / 2e-32 ABIL4 ABL interactor-like protein 4 (.1) AT2G46225 97 / 4e-23 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023052 [exp] 206 / 2e-66 AT5G24310 101 / 7e-27 ABL interactor-like protein 3 (.1.2) Lus10005919 [exp] 136 / 1e-37 AT5G24310 400 / 2e-140 ABL interactor-like protein 3 (.1.2) Lus10022393 [exp] 107 / 4e-27 AT5G24310 360 / 2e-125 ABL interactor-like protein 3 (.1.2) Lus10002151 [exp] 103 / 1e-25 AT2G46225 370 / 2e-129 ABI-1-like 1 (.1.2.3) Lus10008737 [exp] 100 / 3e-24 AT2G46225 377 / 5e-132 ABI-1-like 1 (.1.2.3) Lus10043223 [exp] 68 / 2e-12 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10011102 [exp] 67 / 4e-12 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10023654 [exp] 58 / 2e-09 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1) Lus10034928 [exp] 55 / 3e-09 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G088100 [exp] 182 / 1e-55 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.003G142800 [exp] 175 / 6e-53 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2) Potri.012G016900 [exp] 136 / 8e-38 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.002G165900 [exp] 97 / 3e-23 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.014G092300 [exp] 96 / 5e-23 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.018G082600 [exp] 57 / 2e-09 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032421 pacid=23168594 polypeptide=Lus10032421 locus=Lus10032421.g ID=Lus10032421.BGIv1.0 annot-version=v1.0 ATGGATATCAAGAACAGCTCATCATCTTCCAAGCTGTATGGAGGTGCAACTTCAGATGAACATCTCATGCTGCAGAAAACACTCTTCTCTGCCACTCTCA ATGATTTGAAGAGTCTGAGAGAACAGTTGTACACTGCAGCTGAATATTTTGAAGAGGTGATTGAAACCTGCAAGGACTACGCCATAAAGGCCCTGATCAA TACAGTCGACCACTTGGGTTCCGTAGCATTCAAGCTCAACAGTTACATCGACCACACAACTTGTGAAGTTGCTTCAATGGACCTCAGAGTCTATTCCATG GACCAGAGATTGGAAACTTGTCAACAATACATAAACCAAGGAGGGATGTATCAGAACTCTCTATCGTTCACAACTCCAATTCAGTACCACAAACAAAATA TGCTGATTTTCTGTGAGGTGCATAACAAGTTCTTCTGCTCAGGAGAGGAAGATGGAACCGCTCGTAGAAGAAGTAGCTCGAGTATCGAAATCGATTTCAC TGGCAGCAGTCCCTCATCCTTTCTTCGCAGAGAAGGGTATTCCAAGTTGACATTTCCACAAGTGTTTGCAAGACAAGCTACATTACCGTTTTCATGGAGT TCTACTAGTAGCAGTAGTAATAAAAGCAGTGAGTCCCCACAGAAGTACCCACTTCTCCGGTCTGGATCTCTGCTTGTCAAGAGATCAATGTCTACAAACT ATGCCAATGGAGGGAAGCCACAGAATCCGTTACCTCCGCGGAGATTGGTGTCGTGGTCGGAACAAAGGAGAAGAGACGGTGAAGCGAATGAGCAGCGTTC CAGCAGAAGCAAACGCTTGTTGAAGTCGCTAGTGAGCTTGAGGAGGTCGAGGAAAGATGGTTCCATTATTTACAAACATTTGGAGCAGATTTGA
AA sequence Show only first row Show all	>Lus10032421 pacid=23168594 polypeptide=Lus10032421 locus=Lus10032421.g ID=Lus10032421.BGIv1.0 annot-version=v1.0 MDIKNSSSSSKLYGGATSDEHLMLQKTLFSATLNDLKSLREQLYTAAEYFEEVIETCKDYAIKALINTVDHLGSVAFKLNSYIDHTTCEVASMDLRVYSM DQRLETCQQYINQGGMYQNSLSFTTPIQYHKQNMLIFCEVHNKFFCSGEEDGTARRRSSSSIEIDFTGSSPSSFLRREGYSKLTFPQVFARQATLPFSWS STSSSSNKSSESPQKYPLLRSGSLLVKRSMSTNYANGGKPQNPLPPRRLVSWSEQRRRDGEANEQRSSRSKRLLKSLVSLRRSRKDGSIIYKHLEQI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Lus10032421 [exp]	0	1
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10023052 [exp]	1.0	0.8265
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10015550 [exp]	6.6	0.8016
AT4G15250	CO	COL11	B-box type zinc finger protein...		Lus10039695 [exp]	11.3	0.7250
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Lus10040691 [exp]	14.7	0.7300
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018523 [exp]	16.1	0.7055
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	20.4	0.7188
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	22.3	0.6942
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	27.0	0.6852
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	27.4	0.6844
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	29.3	0.7086

Compare expression of checked genes

Lus10032421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.