Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64530 293 / 1e-90 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 294 / 5e-90 NLP7 NIN like protein 7 (.1) AT4G35270 180 / 4e-49 NLP2 Plant regulator RWP-RK family protein (.1) AT1G20640 175 / 2e-47 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 174 / 3e-47 NLP5 Plant regulator RWP-RK family protein (.1) AT2G17150 158 / 5e-42 NLP1 Plant regulator RWP-RK family protein (.1.2) AT2G43500 156 / 6e-41 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 145 / 4e-37 NLP9 Plant regulator RWP-RK family protein (.1.2) AT4G38340 127 / 4e-31 NLP3 Plant regulator RWP-RK family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023049 [exp] 489 / 2e-166 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10001811 [exp] 352 / 1e-116 AT1G64530 590 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 358 / 5e-114 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023930 [exp] 168 / 4e-45 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 166 / 2e-44 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 165 / 9e-44 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 163 / 3e-43 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10030744 [exp] 161 / 7e-43 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 160 / 2e-42 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087900 [exp] 326 / 1e-101 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 320 / 1e-99 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 192 / 2e-53 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 189 / 6e-52 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 171 / 9e-46 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 167 / 2e-44 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 164 / 2e-43 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 164 / 2e-43 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 163 / 3e-43 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 152 / 2e-39 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Lus10032423 pacid=23168688 polypeptide=Lus10032423 locus=Lus10032423.g ID=Lus10032423.BGIv1.0 annot-version=v1.0 ATGACTGAACTGGAAATCGCCGACATTTCAAAGCACCAAAGTCAGCTGCACCATACCCTTTTGATCACAGACAGCCAAGAGCCGTTGATGATGGACCTCG ATTTTGATCTCTACAGTTCATCCTGGCCCTTGGATCACTTCCCTTTCCCTCCAAGTCATCCAACGTCACCCCTTTTCCTCTCCAACTCTGACTACTCCCA GCCTTGTTTCCCTCTTTGGTCATTCTCCGCCGCCGCCGACGATGACGATGACGACAACTCGCCTCCCTCCGACACCGCCGCTGTTCATGATTACCCACTC TTTATCACATGTAACTTTAAACCAATGCCATCTCCAATGGATAGCTCAGATGGGCATTGTTCGATCAAAGAGCGAATGACACGAGCTCTGAGATACTTGA AACAGTCAACGGATCAGCAACACATTCTAGCTCAAATTTGGGCGCCAGTGAAGAAAATTGGAGGAAGTCGATTTGTTCTGACGACTTCGGAGCAACCATT TGTGCTTGATCCTCACTGCAACGGGCTTAATCAGTATAGGATGGTCTCTCTTTTGTACACATTCTCTGTGGATGATGATGATGAAGAGACTGATGGAGCA GCAGGAGATGATCACTTGGGGCTTTCTGGTCGGGGTTTCCACCAGAAGTTGCCTGAATGGACTCCTAATGTTCAGTATTACTCTAGCAAAGAGTACTCAC GGCTTGACCATGCTTTGCACTATAACGTCCGAGGAAGTCTGGCTTTGCCAGTTTTCGAAACCGATTCTGGTGGGAAGTCATTGTCTTGTGTTGGTGTGCT TGAGCTTGAGATGACTTCCCAGGTTGTCAATTATGCTCCTGAGGTTGATAAAGTCTGCAAGGCTCTTCAGGCAGTGAATCTGAAGAGTTCTGAAGTATTG GACCATCCTAAACCACGGGTAAAGCTGCCAAGCTATGACATTCTTGTCGCTGTATATCATGGTAAGAATGCACTGGCCGAGATTCAAGAGATATTGACAC TAGCGTGCGAGACCCACGGCTTGCCTTCAGCTCATGTTTGGGTTCCATGTATGCATCGTTGTGTTCTGGCTAATGTTTGCCCTACTACAATGAAGGGCAT ATGCAGGCATTATGGGATCTCCAGGTGGCCATCTCGCAAGATCAACAAGGTGAACAGATCCCTCACGAAGCTACAGAAGGTGATTGAATCCGTTCGAGTT ATTCCTCCCGATGCATCATTTCACTTGGGACAAGATTCGACGAAATCAGGCAACTCTACTTCTCATGGTTCATGTGAAGGCAGCCCTGCTGCAACAAAGG ACCAGCCTTTGAATTCTGCTTCTCCGGTTCGAGACCACGAAGAGAAGAGTGTGATCGTAAAAGCGACATACAAACAAGACATGATAAGGTCAGGATCAGG ACGAGGTGTGGGATGA
AA sequence Show only first row Show all	>Lus10032423 pacid=23168688 polypeptide=Lus10032423 locus=Lus10032423.g ID=Lus10032423.BGIv1.0 annot-version=v1.0 MTELEIADISKHQSQLHHTLLITDSQEPLMMDLDFDLYSSSWPLDHFPFPPSHPTSPLFLSNSDYSQPCFPLWSFSAAADDDDDDNSPPSDTAAVHDYPL FITCNFKPMPSPMDSSDGHCSIKERMTRALRYLKQSTDQQHILAQIWAPVKKIGGSRFVLTTSEQPFVLDPHCNGLNQYRMVSLLYTFSVDDDDEETDGA AGDDHLGLSGRGFHQKLPEWTPNVQYYSSKEYSRLDHALHYNVRGSLALPVFETDSGGKSLSCVGVLELEMTSQVVNYAPEVDKVCKALQAVNLKSSEVL DHPKPRVKLPSYDILVAVYHGKNALAEIQEILTLACETHGLPSAHVWVPCMHRCVLANVCPTTMKGICRHYGISRWPSRKINKVNRSLTKLQKVIESVRV IPPDASFHLGQDSTKSGNSTSHGSCEGSPAATKDQPLNSASPVRDHEEKSVIVKATYKQDMIRSGSGRGVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10032423 [exp]	0	1
AT2G40570			initiator tRNA phosphoribosyl ...		Lus10012958 [exp]	5.5	0.6886
AT3G46920			Protein kinase superfamily pro...		Lus10019577 [exp]	13.5	0.7674
AT3G14460			LRR and NB-ARC domains-contain...		Lus10002737 [exp]	17.9	0.6752
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	23.8	0.6825
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	26.0	0.6466
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	34.3	0.6543
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10043195 [exp]	36.2	0.6715
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	45.7	0.6783
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	54.9	0.6496
AT2G26270			unknown protein		Lus10038079 [exp]	55.2	0.6306

Compare expression of checked genes

Lus10032423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.