Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04160 123 / 4e-33 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 119 / 1e-31 ATSBT5.4 Subtilase family protein (.1) AT4G10530 85 / 1e-19 Subtilase family protein (.1) AT4G10520 84 / 3e-19 Subtilase family protein (.1) AT5G11940 83 / 6e-19 Subtilase family protein (.1) AT3G14067 79 / 1e-17 Subtilase family protein (.1) AT4G10550 78 / 3e-17 Subtilase family protein (.1.2.3) AT4G21326 78 / 3e-17 ATSBT3.12 subtilase 3.12 (.1) AT5G03620 77 / 9e-17 Subtilisin-like serine endopeptidase family protein (.1) AT1G32960 76 / 2e-16 ATSBT3.3 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023048 [exp] 284 / 2e-92 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 170 / 1e-49 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032096 [exp] 145 / 1e-40 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Lus10014591 [exp] 136 / 2e-37 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10016064 [exp] 132 / 3e-36 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039087 [exp] 107 / 1e-27 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 104 / 1e-26 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 104 / 2e-26 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 102 / 1e-25 AT5G59810 850 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050100 [exp] 169 / 3e-49 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 168 / 3e-49 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 167 / 8e-49 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 147 / 1e-41 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 144 / 1e-40 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 137 / 3e-38 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 137 / 4e-38 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.005G067200 [exp] 135 / 3e-37 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 125 / 5e-34 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 111 / 5e-29 AT5G59810 754 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Lus10032424 pacid=23168564 polypeptide=Lus10032424 locus=Lus10032424.g ID=Lus10032424.BGIv1.0 annot-version=v1.0 ATGTCTTATAGTATTTCCTCTCTGCTGCTGTTTGTACTACTCCTGCAACCCCTTTGGCTCATCTCGACTGTGTCTGCTGGTGCTGATAAAAAACAGTCAT ATGTAGTGTATCTTGGGAGACATGACCAACATAACTCTGGCCGGAATCCTGTTTTTACTGCTGATCAAATGAGTCACGCTTATTTACAGCTGTTGGGTTC TTGCCTGCTGAGCAAGGAGAAGGCTAAAGAAGCTATATTCTACTCATACTCAAGCCACATCAATGGCTTTGCAGCTATGCTTGAAGATGAGGAAGTAGAT ATGCTCTCCAGTCACCCAGGAGTGGTATCAGTACTCCCAAATAAAGAGCACCACTTGCATACCACAAGGACATGGGGATTCATGGGGCTAGAAGACAGTA GTGGAACGATCCCAGATGACTCTATCTGGAAACATGCAAACTTTGGCCAAGATGTCATTATCGGCAACCTTGATACAGGCTAG
AA sequence Show only first row Show all	>Lus10032424 pacid=23168564 polypeptide=Lus10032424 locus=Lus10032424.g ID=Lus10032424.BGIv1.0 annot-version=v1.0 MSYSISSLLLFVLLLQPLWLISTVSAGADKKQSYVVYLGRHDQHNSGRNPVFTADQMSHAYLQLLGSCLLSKEKAKEAIFYSYSSHINGFAAMLEDEEVD MLSSHPGVVSVLPNKEHHLHTTRTWGFMGLEDSSGTIPDDSIWKHANFGQDVIIGNLDTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	2.0	0.9653
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	2.4	0.9723
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	3.0	0.9689
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	4.9	0.9593
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	5.1	0.9690
					Lus10028069 [exp]	5.9	0.9567
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	6.3	0.9639
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10010737 [exp]	9.2	0.8595
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029981 [exp]	9.9	0.9413
					Lus10027053 [exp]	11.0	0.9196

Compare expression of checked genes

Lus10032424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.