Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 607 / 0 ATSBT5.4 Subtilase family protein (.1) AT2G04160 602 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 490 / 1e-165 ARA12 Subtilase family protein (.1) AT4G34980 466 / 3e-156 SLP2 subtilisin-like serine protease 2 (.1) AT2G05920 458 / 4e-153 Subtilase family protein (.1) AT3G14067 449 / 4e-149 Subtilase family protein (.1) AT5G45650 442 / 2e-146 subtilase family protein (.1) AT3G14240 439 / 1e-145 Subtilase family protein (.1) AT1G20160 428 / 7e-142 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT5G51750 429 / 1e-141 ATSBT1.3 subtilase 1.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023048 [exp] 1128 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 818 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10014591 [exp] 710 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10016064 [exp] 623 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032096 [exp] 613 / 0 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Lus10038772 [exp] 565 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 561 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038774 [exp] 554 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 553 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050000 [exp] 708 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 696 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 693 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 689 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 675 / 0 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 673 / 0 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 637 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 613 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 606 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.001G468800 [exp] 598 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10032425 pacid=23168692 polypeptide=Lus10032425 locus=Lus10032425.g ID=Lus10032425.BGIv1.0 annot-version=v1.0 ATGTCCTTCGAAAATAGTAAGTTGATCGGAGCAAGATACTTTAACAAGGGCTTCCAAGCTGGTAAAGGCCATAAACTAAGTGCATCTGAGGACACCGCAA GAGACAATGATGGACATGGAAGCCATACCCTTTCCACAGCAGCCGGTTGCCTTGTTCCGGGGGCGAACCTGTTAGGGTCCGCCAATGGAACAGCCAAAGG CGGTTCTCCGAAAGCATGGGTTGTTACATACAAAGTTTGTTGGCCAGGGTGCTATGAGGCTGACATATTGGCTGCATTTGATGCTGCAATTCAGGACGGG GTCGATATCTTGTCCCTTTCGCTCGGTAGTTATCTTCCTCAAGACTATTCGTCGGACAGTATTGCGATCGGTTCGTTTCATGCTGCGAGGAATGGGATTT CTGTAGTGTGTTCGGCTGGGAATTCGGGACCACTCGCTTCATCTGTTACGAATGTGTCACCGTGGATTCTCACTGTTGCAGCCAGCACAGTGGATAGACA GTTCCAGTCAAATGTCACCCTTGGAAATGGACGTCAATTCAAGGGACTCAGTTACAACAGCAATACCTTACCAGCTGGAAAGTTTTATCCTTTAATCAAT GCAACGGATGCGAAATCCTCCAGTGCTGATGTTAATGATGCAAAGTACTGCTATTCAGGTTCAATTGAGCCAAGTATGGTGAAAGGGAAGATTGTGGTGT GCATTCGGAGTAGTTCGGATGTTGAGAAGAGCCAAGCGGTTTCGGAAGCTGGAGGAGTTGGAGTACTGCTTCTAAATTCATTCTCAGGTTCGCCGAGTCC CCAAGCGCACTTTCTCCCTGCTTCCGTCGTCTCAAAGGAAGATGGTGATTCCATTTCAGCTTACATATCTGCAACACCGTTCCCTGAAGCTTATATAAGT GGCGGTACTGTTATTGGAGAGGCAGTAGCACCATCCATGGCTTCCTTCTCGTCAAGTGGACCTAATCGACTCACTCCAGAAATATTGAAGCCGGATGTTA CCGCACCTGGGGTCTACATTCTAGCAGCCTATTCAGAAGCAACGGGGCCAACTGGGGATTCAGACAGCCGCCATCTCCCCTTTAACATCATCTCTGGTAC CGCAATGTCGTGTCCTCATGTCACCGGAATTGTTGGCCTTGTCAAAAGCATTCATCCAGAATGGAGTCCGGCTGCCATCAAGTCTGCAATCATGACCACA GCTGTGTCAAAGAGCAATAAGGGAGAATCAATCCTGACAGCGTCAGGAGTCGAAGCAAACCCTTTCAATTACGGATCAGGACATGTGTGGCCTAACAAAG CAATGGATCCAGGCTTGGTTTACGACATGAATCTCACTGATCACTTGAACTTCCTTTGCTACATTGGTTATGATGACAAACAATTGGCCCTGTTCTACAA CAAGCCATATCAATGTCCTTCGAAGACCATCGACAGCTTGTCAAATATCAACTATCCATCCATCACCATCCCTGAGCTATCAGGGACCATCACGGTGACT CGAACCCTTAAAAATGTCGGAACTCCAGGTGTGTACATGGCCAATGTGGATGTACCTCCAGGGGTCTCTGTTAAGGTTGAGCCAAAGAGCTTGGAATTCA AAGCAATGGATGAAGAAAAGAGCTTCAAAATCACCTTGGAGCCTACGGCGAATCTAGGGAGTGGTTATGGCTTTGGAGAGCTTACTTGGTCAGATGGAAT ACACAATGTTAGGAGTCCTGTTGTTGTTAAGAAGGCAGAAAAAGCATTACTCCAAACAGTTTATAGTTCTGTACATTAA
AA sequence Show only first row Show all	>Lus10032425 pacid=23168692 polypeptide=Lus10032425 locus=Lus10032425.g ID=Lus10032425.BGIv1.0 annot-version=v1.0 MSFENSKLIGARYFNKGFQAGKGHKLSASEDTARDNDGHGSHTLSTAAGCLVPGANLLGSANGTAKGGSPKAWVVTYKVCWPGCYEADILAAFDAAIQDG VDILSLSLGSYLPQDYSSDSIAIGSFHAARNGISVVCSAGNSGPLASSVTNVSPWILTVAASTVDRQFQSNVTLGNGRQFKGLSYNSNTLPAGKFYPLIN ATDAKSSSADVNDAKYCYSGSIEPSMVKGKIVVCIRSSSDVEKSQAVSEAGGVGVLLLNSFSGSPSPQAHFLPASVVSKEDGDSISAYISATPFPEAYIS GGTVIGEAVAPSMASFSSSGPNRLTPEILKPDVTAPGVYILAAYSEATGPTGDSDSRHLPFNIISGTAMSCPHVTGIVGLVKSIHPEWSPAAIKSAIMTT AVSKSNKGESILTASGVEANPFNYGSGHVWPNKAMDPGLVYDMNLTDHLNFLCYIGYDDKQLALFYNKPYQCPSKTIDSLSNINYPSITIPELSGTITVT RTLKNVGTPGVYMANVDVPPGVSVKVEPKSLEFKAMDEEKSFKITLEPTANLGSGYGFGELTWSDGIHNVRSPVVVKKAEKALLQTVYSSVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	0	1
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	1.0	0.9879
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10007243 [exp]	2.0	0.9861
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	2.4	0.9783
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	2.8	0.9831
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	3.0	0.9857
AT4G02690			Bax inhibitor-1 family protein...		Lus10004078 [exp]	3.2	0.9795
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	5.1	0.9690
					Lus10007415 [exp]	5.9	0.9774
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	6.9	0.9690
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	7.4	0.9718

Compare expression of checked genes

Lus10032425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.