Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10850 228 / 1e-74 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G62850 211 / 3e-68 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT1G66770 204 / 3e-65 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT3G28007 187 / 1e-58 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT5G40260 161 / 1e-48 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT1G21460 149 / 4e-44 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G15920 140 / 1e-40 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G14770 139 / 2e-40 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT5G13170 133 / 3e-37 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT4G25010 130 / 2e-36 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023047 [exp] 375 / 2e-132 AT4G10850 218 / 4e-71 Nodulin MtN3 family protein (.1) Lus10003200 [exp] 335 / 7e-117 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10017302 [exp] 332 / 2e-115 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 218 / 7e-71 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10033416 [exp] 204 / 4e-65 AT5G62850 283 / 8e-97 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10002364 [exp] 201 / 4e-64 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10042131 [exp] 190 / 1e-59 AT5G62850 265 / 2e-89 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10022226 [exp] 181 / 3e-56 AT5G62850 223 / 4e-73 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10011990 [exp] 145 / 2e-42 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143100 [exp] 270 / 5e-91 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 203 / 4e-65 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 196 / 2e-62 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 142 / 2e-41 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 142 / 3e-41 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 141 / 4e-41 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 141 / 5e-41 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 136 / 1e-38 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.008G220600 [exp] 134 / 2e-38 AT4G15920 261 / 3e-88 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 134 / 3e-38 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10032426 pacid=23168584 polypeptide=Lus10032426 locus=Lus10032426.g ID=Lus10032426.BGIv1.0 annot-version=v1.0 ATGTCGTCTCTTGAGACTGCCAGGACTGCTGTTGGCATCATGGGCAACGTCATCTCCCTCTGCTTGTTTCTCTCGCCGGTGCCAACATTCGTGCAGATAT GGAAAAAAGGGTCGGTGGAGCGTTTCAAACCGGACCCGTACCTGGCGACACTGATGAACTGCATGGTGTGGGTGGTGTACGGTCTCCCCATGTTCCACCC GGACAGCACTTTAGTGCTCACAATCAACGGTGCTGGGACGTTCATCCAGTTGGTGTACATAGCACTCTTCCTCGTCTACTCCGACAAGAAGAAGCGGATC AAGGTCCTCTCCATCCTCTTGCTCGAAATAGCCTTCGTCGTCGCGCTCCTCCTCCTCCTCGCCTTCCTCGTGCACCCTCTCGAGAAGCGCGGCTTCGTCG TAGGCGTCTTCTGCATCGTCTTCTGTATCATGATCTACCTCGCTCCCCTCTCTGTCATGAAACTGGTGATGAAGACGAAGAGTGTGGAGTACATGCCGTT TTACCTATCCTTGGCCTCCTTAGCCAACGGCGCTTGCTGGACAGCTTACGCCTTGATCAAAATCGAAGTGTTCATAATTATACCGAATGGAGTAGGGGTG TTGCTGGCGATGGGGCAGCTTGCACTGTACGCCGCATTCTACAAATCGACGCAGAGGCAGATTGCAGAGAGGAAAGCGGCGGAGAAAGGCGGCGCCAGTG GTACTACTGGGGAGCTGAATCTGTCGCAGGTGGGCGTTGTTGTTGTGGATAGAGACGAATTAGATGCTGCTAACTATGTCAAGAAAGCTGCACGCAACGG CGCCGTATAG
AA sequence Show only first row Show all	>Lus10032426 pacid=23168584 polypeptide=Lus10032426 locus=Lus10032426.g ID=Lus10032426.BGIv1.0 annot-version=v1.0 MSSLETARTAVGIMGNVISLCLFLSPVPTFVQIWKKGSVERFKPDPYLATLMNCMVWVVYGLPMFHPDSTLVLTINGAGTFIQLVYIALFLVYSDKKKRI KVLSILLLEIAFVVALLLLLAFLVHPLEKRGFVVGVFCIVFCIMIYLAPLSVMKLVMKTKSVEYMPFYLSLASLANGACWTAYALIKIEVFIIIPNGVGV LLAMGQLALYAAFYKSTQRQIAERKAAEKGGASGTTGELNLSQVGVVVVDRDELDAANYVKKAARNGAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10032426 [exp]	0	1
					Lus10006529 [exp]	3.0	0.9848
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10014134 [exp]	3.6	0.9018
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	4.2	0.9848
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	5.2	0.9848
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	6.0	0.9848
					Lus10035557 [exp]	6.7	0.9848
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	7.3	0.9848
					Lus10005297 [exp]	7.9	0.9848
					Lus10013260 [exp]	8.5	0.9848
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	9.0	0.9811

Compare expression of checked genes

Lus10032426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.