Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30960 409 / 5e-140 GTP-binding family protein (.1) AT5G66470 85 / 1e-17 RNA binding;GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023046 [exp] 689 / 0 AT1G30960 499 / 5e-176 GTP-binding family protein (.1) Lus10014289 [exp] 82 / 2e-16 AT5G66470 587 / 0.0 RNA binding;GTP binding (.1) Lus10025995 [exp] 62 / 8e-10 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10004103 [exp] 45 / 0.0002 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013359 [exp] 44 / 0.0002 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10002557 [exp] 43 / 0.0007 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G160800 [exp] 461 / 5e-161 AT1G30960 491 / 4e-173 GTP-binding family protein (.1) Potri.007G021900 [exp] 86 / 7e-18 AT5G66470 535 / 0.0 RNA binding;GTP binding (.1) Potri.009G017000 [exp] 43 / 0.0003 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10032427 pacid=23168471 polypeptide=Lus10032427 locus=Lus10032427.g ID=Lus10032427.BGIv1.0 annot-version=v1.0 ATGAAATCTTTCCGAGCGATCAGAGCGTTTGCGTCGTTCACTGCTCCTCCACCTTCCAATTCCTTTCTTCGCAATCCAGCTCGTATCCCTCGTTACTTCA CAGCTCAACCCGAACACCACGATACTGACGCTGCCGACGGCTTCGACAGCAGCCACTACGCGATTCCCGGCATTGATTCGGATGCAGCATCTGTTTCCTC CTCATCTTCGAGATCCATTGGCGAAGAACCCACCTGGGATGGGAAGTACAGAGATAGAGCTGATAAGGTGGTGTTTGGGGAAGAAAAACCCCAGAAGAAA GTCAACCTGAAGACGCTGCACGAGGAAGAGGAAGATATGAAGAGGAGAGTGCTGGCGAGAGCTTTACTGGAGGCAGCACTCAAGGGAGATGATGACGATG AAGAATTAGTGAGGGAAGAAGACCAGAAGTCACTCTCTGTTGGGATTATTGGTGCTCCCAATGCTGGCAAATCCTCATTGACAAATTACTTGGTGGGAAC AAAAGTTTCTGCTGTGTCGCGGAAAACCAATACAACTATTCATGAAGTTCTGGGAGTGATGACGAGAGGAGACACCCAAATTTGCCTCTTCGACACTCCT GGTCTCTTGCTAAATGGACGTGGGTATGCTTATCAAGATGCGAGGACACGTGTTCAAAATGCTTGGAGCTCAATTGGGTTGTATGATGTTCTTGTGGTTA TTTTCGATGTTGAGAGACACCTAACCAGGCCTGATTTGAGGGTGATAAAGTTGATAAAAAGATTGGGAGAGCATGAAGACACAAAGCAAAAGAGGGTATT ATGCATAAATAAGGTTGACCTAGTAAAAAAGAAGAAAGAGTTGTTAAAAGTCATGGAGCAATTTAAAGACCTTCCTGCCTATGAAAGGCAATTCTTGATC TCAGGGCTGAAGGGTGTTGGAGTGAAGGATCTTACTGAATACTTGATGTCTAAGGCATTCAAAAGGCCGTGGGATGAAGATCCCCTTGAGATGGGTGAGG AACTTATGAAGAACATTTCATTAGAAGTCGTCCGAGAAAGATTATTAGATCACGTTCATCAGGAAATCCCATATAGTATCGAGCATCGGTTGATGGACTG GAAGGAACTAAGGGATGGCTCGCTTAGGATAGAACACCACTTAATCACTAACAAGTTAAGCCAGCGGAAGATCCTCGTCGGCAAGGGGGGCTCCAAAATA GGGAGAATAGGTATAGAAGCTAACGAAGAGCTGAAGTCGATATTCAAGAGGGAAGTGCACCTCATCCTTAAGGTTTTGGAAACTGGATCGGAGATTGAAT CGGTGAGGTTTGGGGTTCAGGGTTTGATAGTTCGATCGTTTGCTAAACCGGGTTGTACCATTTAA
AA sequence Show only first row Show all	>Lus10032427 pacid=23168471 polypeptide=Lus10032427 locus=Lus10032427.g ID=Lus10032427.BGIv1.0 annot-version=v1.0 MKSFRAIRAFASFTAPPPSNSFLRNPARIPRYFTAQPEHHDTDAADGFDSSHYAIPGIDSDAASVSSSSSRSIGEEPTWDGKYRDRADKVVFGEEKPQKK VNLKTLHEEEEDMKRRVLARALLEAALKGDDDDEELVREEDQKSLSVGIIGAPNAGKSSLTNYLVGTKVSAVSRKTNTTIHEVLGVMTRGDTQICLFDTP GLLLNGRGYAYQDARTRVQNAWSSIGLYDVLVVIFDVERHLTRPDLRVIKLIKRLGEHEDTKQKRVLCINKVDLVKKKKELLKVMEQFKDLPAYERQFLI SGLKGVGVKDLTEYLMSKAFKRPWDEDPLEMGEELMKNISLEVVRERLLDHVHQEIPYSIEHRLMDWKELRDGSLRIEHHLITNKLSQRKILVGKGGSKI GRIGIEANEELKSIFKREVHLILKVLETGSEIESVRFGVQGLIVRSFAKPGCTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	0	1
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	4.5	0.9207
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	5.2	0.9266
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	6.3	0.9059
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	6.5	0.8906
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	7.7	0.9057
AT5G48240			unknown protein		Lus10041095 [exp]	11.4	0.8996
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	12.2	0.9111
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	12.8	0.8964
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10039016 [exp]	13.8	0.8170
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	14.7	0.9054

Compare expression of checked genes

Lus10032427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.