Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42020 935 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 934 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 793 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G09440 649 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 638 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT5G02490 635 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G56410 604 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 591 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 580 / 0 HSP70B heat shock protein 70B (.1) AT5G09590 427 / 6e-140 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023043 [exp] 1038 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10017306 [exp] 890 / 0 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10003202 [exp] 841 / 0 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017022 [exp] 694 / 0 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10023418 [exp] 682 / 0 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 675 / 0 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10029455 [exp] 670 / 0 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025336 [exp] 669 / 0 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 634 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143600 [exp] 962 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 842 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 828 / 0 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 798 / 0 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.010G205700 [exp] 639 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042700 [exp] 620 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 594 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 593 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 592 / 0 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 588 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10032430 pacid=23168582 polypeptide=Lus10032430 locus=Lus10032430.g ID=Lus10032430.BGIv1.0 annot-version=v1.0 ATGTCAGGCTCTCGAAGAGCACGCGGTCTCGTCGTCTCTGCAGTTCTCTTGTTCGGTTGCCTATTCGCAATTTCCATTGCGAAAGATGAAGCCCCCAAGT TAGGCACAGTTATTGGTATAGATCTTGGAACTACGTACTCTTGCGTTGGTGTGTACAAGAACGGTCACGTGGAAATCATAGCCAATGACCAAGGAAACCG TATCACCCCATCGTGGGTTGCGTTCACCGACAGTGAGAGACTGATCGGCGAGGCTGCTAAGAATCAAGCAGCTGTGAACCATGAAAGGACTGTCTTTGAT AAAATCAAGGATGCCGTTGTCACTGTTCCTGCCTACTTCAATGATGCCCAGAGACAGGCCACCAAGGATGCTGGTGTTATTGCTGGGCTTAATGTAGCTA GGATCATCAACGAGCCTACTGCTGCTGCCATCGCCTATGGTTTGGACCAAAAAGGTGGCGAGAAGAACATCCTTGTCTTCGATCTTGGTGGTGGTACTTT TGATGTTAGTGTCTTGACTATTGACAACGGAGTTTTTGAGGTCCTTTCAACCAACGGTGACACCCATTTGGGAGGTGAGGACTTCGATCAGAGAATCATG GAGTACTTCATCAAGTTAATCAAGAAGAAGCACGGAAAGGACATCAGCAAGGACAACAGGGCTCTTGGAAAGCTCAGGAGGGAAGCTGAGCGTGCCAAGA GAGCTCTTAGTAGCCAGCATCAAATCCGTGTGGAAATCGAATCACTCTTTGATGGTGTTGACTTCTCCGAACCACTCACCAGAGCTCGTTTCGAGGAATT GAACAACGATCTGTTTAGGAAGACCATGGGACCCGTGAAGAAGGCCATGGACGATGCAGGCTTGGAAAAGAACCAGATTGATGAGATTGTCCTCGTCGGA GGAAGTACTAGAATTCCCAAGGTCCAACAGCTCCTCAAGGATTTCTTCAACGGCAAAGAGCCCAACAAGGGAGTTAACCCTGATGAGGCTGTTGCCTATG GTGCCGCTGTCCAGGGTGGCATTCTCAGCGGCGAAGGTGGCGACGAAACCAAGGACATCCTTCTTCTTGATGTCGCACCCCTCACACTGGGTATTGAAAC CGTGGGAGGAGTAATGACCAAGTTGATCCCAAGGAACACCGTTATTCCCACCAAGAAATCCCAAGTTTTCACTACATACCAGGATCAGCAGACCACTGTC TCCATTCAGGTATTTGAAGGTGAAAGGAGTATGACCAAGGACTGTAGGTTGCTCGGGAAATTTGACCTTACCGGAATCCCTCCAGCTCCCAGAGGAACCC CTCAAATTGAGGTGACATTCGAAGTGGATGCCAACGGTATCCTGAACGTGAAAGCAGAAGACAAGGCCTCCGGCAAGGCGGAGAAGATCACAATCACCAA CGAGAAGGGACGTCTGAGCCAGGAAGAGATTGAGCGGATGGTCCGCGAGGCAGAGGAGTTTGCCGACGAGGACAAGAAGGTTAAGGAGAGGATCGACGCC CGTAACAGCTTGGAGACATATGTCTACAACATGAAGAACCAGATCAACGACAAGGACAAGCTGGCTGACAAGCTTGAAGGTGACGAGAAGGAGAAGGTTG AAGCCGCCACCAAGGAGGCTCTTGAATGGTTGGACGACAACCAGACGGCAGAGAAGGAAGACTACGAGGAGAAGCTCAAGGAGGTGGAAGCTGTGTGTAA CCCGATCATCGCCGCAGTGTACCAGCGCTCAGGTGGTGCTCCAGAAGGTGGTGCTTCCGGTGATGACGAGGATGATTCTCACGACGAACTTCTGATCTTC TCTACTGGCCATCTTGTGTTCTTGTTTGCAAATCAATCAAGCACTCCGAGTGAGGAAAGCTGGAAAACGTTGGAGATCTCAGCATGCATGCAGTGGGTGA GTAGCATGGGATATGGCCATGCCATCTTCGAAATCAACGACCAACCGGCAGCAATTGCTATCACCGGAGACATGCTTGATGTTTCAGAGTTTGACCGGAT GGTAGCTTCATGCAAGAATTTCATTGAAAATAAACATCTTAAGCCAGCTCGCGAACCTATCAAGTCGAACATACCTAACTCAAATAAGTTTGACAACGCG TACGGACGGACGGGTGCGGATAGTAGACCCCGATCCCCGCCCATCGACGCCGCCAGGTTTATCTGTCCCCGACCCCGGAGCAAAAACGAGGATGATATTA CTACCGGCCCCGCCCCCGTCGGATAA
AA sequence Show only first row Show all	>Lus10032430 pacid=23168582 polypeptide=Lus10032430 locus=Lus10032430.g ID=Lus10032430.BGIv1.0 annot-version=v1.0 MSGSRRARGLVVSAVLLFGCLFAISIAKDEAPKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNHERTVFD KIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDQKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDQRIM EYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQIRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLEKNQIDEIVLVG GSTRIPKVQQLLKDFFNGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTV SIQVFEGERSMTKDCRLLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKAEKITITNEKGRLSQEEIERMVREAEEFADEDKKVKERIDA RNSLETYVYNMKNQINDKDKLADKLEGDEKEKVEAATKEALEWLDDNQTAEKEDYEEKLKEVEAVCNPIIAAVYQRSGGAPEGGASGDDEDDSHDELLIF STGHLVFLFANQSSTPSEESWKTLEISACMQWVSSMGYGHAIFEINDQPAAIAITGDMLDVSEFDRMVASCKNFIENKHLKPAREPIKSNIPNSNKFDNA YGRTGADSRPRSPPIDAARFICPRPRSKNEDDITTGPAPVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10032430 [exp]	0	1
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10010923 [exp]	1.0	0.9633
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10043021 [exp]	1.4	0.9576
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10033135 [exp]	2.0	0.9325
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Lus10032521 [exp]	2.4	0.9413
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	8.1	0.9266
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	8.8	0.9248
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	9.5	0.9159
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	11.2	0.8985
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10036805 [exp]	11.5	0.9043
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	14.1	0.9089

Compare expression of checked genes

Lus10032430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.