Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64550 1157 / 0 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT5G60790 463 / 2e-155 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT3G54540 452 / 2e-149 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT5G64840 220 / 5e-62 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 218 / 2e-61 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT1G27940 74 / 2e-13 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 74 / 4e-13 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28345 71 / 2e-12 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 70 / 6e-12 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT4G25960 70 / 6e-12 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023043 [exp] 1362 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10038681 [exp] 466 / 2e-156 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10028810 [exp] 456 / 2e-152 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10029363 [exp] 457 / 2e-151 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10016184 [exp] 455 / 2e-150 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10037947 [exp] 446 / 2e-147 AT5G60790 990 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10005798 [exp] 228 / 6e-65 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10006804 [exp] 228 / 7e-65 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000013 [exp] 77 / 4e-17 AT3G54540 172 / 8e-52 ATP-binding cassette F4, general control non-repressible 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087300 [exp] 1168 / 0 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.004G214300 [exp] 459 / 6e-154 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.010G254400 [exp] 461 / 1e-152 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.009G007800 [exp] 452 / 4e-151 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.008G003300 [exp] 456 / 9e-151 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.005G084800 [exp] 225 / 7e-64 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.007G080600 [exp] 225 / 8e-64 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.017G081100 [exp] 74 / 2e-13 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.001G417600 [exp] 74 / 3e-13 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 73 / 6e-13 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10032431 pacid=23168459 polypeptide=Lus10032431 locus=Lus10032431.g ID=Lus10032431.BGIv1.0 annot-version=v1.0 ATGGCCGAAGTGGCGAGCTCACTGGTGCACCAAGTGCTGGGAAAGCGAATCGAGGACGTGGATCAGCCTATTGTCGACTATATCGTTAACGTGCTCGCTG ATGAGGACTTCGATTTCGGCGAAGATGGTGAGGGCATTTTCCAAGCACTTGGCGAGCTCATCGTCGCTGCTGAATGCGTTTCTGATATGCCTGAGTGCCG CCAGGTCTGTAGCAAATTGTGTGAGAAGTTTGGAAAGCATGGACTGGCGAAACCAAAACCGACTGTGCGAAGTCTGACCACACCTTTTAGAATGAATGAA GGCATGGAAGAGGAAGCTCCTAAGAAGAAGGTTGAGCCGGTAGATGGTCCTTTGTTGACTGAACGTGACAAATTGAAGATAGAAAGGAGAAAGAGGAAGG ACGAGCGGCAGCGAGAGGCACAATATCAAGTCCATCTTTCTGAAATGGAAGCAGTAAGAGCTGGGATGCCTCCTGTATCTGTAAATCATGATAATAGTGG TGGACCTACTGTCAAGGATCTTCATATGGACAATTTCAATATTTCCGTTGGTGGTCGTGATCTTATTGTTGATGGTTCACTGACTCTCTCTTTTGGAAGA CACTACGGACTTGTTGGGAGAAATGGTACTGGGAAAACCACTTTTTTGAGGCACATGGCCATGCACGCAATTGCTGGTATTCCTGCAAACTGCCAAGTTC TACACGTTGAGCAAGAAGTAGTTGGAGACAATACAACAGCTTTACAATGTGTACTAAACTCTGATATTGAAAGAACCCAGCTTCTGGATGAGGAAGCTCG CATACTTGCACAGCAGAGAGAATTAGAGGTTGAGCATGCACTTGGGAATGGAAAAGACCCTAATGGGGTAATTGACAAAGATGGAATGTCCGGGAGACTT GAGCAAATCTACAAAAGGCTCGAGTTTATTGATGCTTACTCTGCTGAAGCACGTGCTGCTTCCATTCTCGCGGGACTCAGTTTCACTTCAGAGATGCAAC ACAAGGCAACCAAAACTTTTTCAGGAGGATGGAGGATGAGAATTGCCCTTGCACGTGCCTTGTTCATTGAACCTGATCTGTTGCTGCTTGATGAACCCAC GAATCATCTTGATCTTCATGCTGTCCTGTGGTTAGAGTCTTACCTGGTAAAATGGCCCAAGACATTTCTTGTTGTATCTCATGCTAGAGAATTTCTGAAC ACGGTAGTCACAGATGTTATCCACTTGCAAAATCAAAAACTGACCTGCTACAAAGGTAATTATGATATATTTGAGAGGACACGAGCTGAACAGCTTAAGA ACCAACAAAAAGCCTTTGAGTCAAATGAACGAGTGCGAGCCCATATGCAGACCTTTATTGACAAGTTCCGGTATAATGCTAAGAGGGCATCTCTTGTCCA GTCAAGAATCAAGGCATTAGATCGGATTGGTCATGTGGACGAAGTTGTTAATGATCCTGACTATAAGTTTGAGTTTCCCACTCCAGATGATAGACCCGGG CCACCTATTATAAGTTTCAATGATGCGTCATTTGGTTATCCAGGCGGCCCCCTATTATTTAAGAACTTGAATTTTGGTATAGATTTGGATAGCCGCGTTG CAATGGTTGGGCCCAATGGGATTGGAAAATCAACAATACTCAAACTAATCTCTGGAGATCTTGAACCCAGCTCGGGTACCGTCTTCCATTCAGCGAAGGT TCGTATTGCTGTGTTTAGTCAGCATCACGTTGATGGACTGGACCTGTCTTCCAATCCCCTTTTGTACATGATGCGCTGCTTCCCTGGAGTACCCGAACCG AAGCTACGAGCTCATTTGGGTTCTTTTGGTGTGACCGGAAACCTTGCCCTTCAACCCATGTACACTCTCTCTGGTGGTCAAAAGAGTAGGGTTGCATTTG CAAAAATTACTTTCAAGAAACCACATCTGATCTTACTCGATGAACCGTCTAATCATCTTGATTTGGATGCAGTGGAGGCGTTAATCCAAGGCCTTGTTAT CTTTCAAGGAGGCATTGTCATGGTTAGTCACGACGAGCATCTGATCTCGGGAAGTGTGGACGAGCTCTGGGCAGTTTCCGAGGGAAGGATATCGCCTTTC CACGGGACGTTCCAGGATTACAAGAAGCTCCTCCACTCTTAA
AA sequence Show only first row Show all	>Lus10032431 pacid=23168459 polypeptide=Lus10032431 locus=Lus10032431.g ID=Lus10032431.BGIv1.0 annot-version=v1.0 MAEVASSLVHQVLGKRIEDVDQPIVDYIVNVLADEDFDFGEDGEGIFQALGELIVAAECVSDMPECRQVCSKLCEKFGKHGLAKPKPTVRSLTTPFRMNE GMEEEAPKKKVEPVDGPLLTERDKLKIERRKRKDERQREAQYQVHLSEMEAVRAGMPPVSVNHDNSGGPTVKDLHMDNFNISVGGRDLIVDGSLTLSFGR HYGLVGRNGTGKTTFLRHMAMHAIAGIPANCQVLHVEQEVVGDNTTALQCVLNSDIERTQLLDEEARILAQQRELEVEHALGNGKDPNGVIDKDGMSGRL EQIYKRLEFIDAYSAEARAASILAGLSFTSEMQHKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLESYLVKWPKTFLVVSHAREFLN TVVTDVIHLQNQKLTCYKGNYDIFERTRAEQLKNQQKAFESNERVRAHMQTFIDKFRYNAKRASLVQSRIKALDRIGHVDEVVNDPDYKFEFPTPDDRPG PPIISFNDASFGYPGGPLLFKNLNFGIDLDSRVAMVGPNGIGKSTILKLISGDLEPSSGTVFHSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEP KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLILLDEPSNHLDLDAVEALIQGLVIFQGGIVMVSHDEHLISGSVDELWAVSEGRISPF HGTFQDYKKLLHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10032431 [exp]	0	1
AT3G10650		AtNUP1	unknown protein		Lus10008959 [exp]	1.0	0.9380
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10017099 [exp]	2.0	0.8932
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Lus10032284 [exp]	5.3	0.8263
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	5.7	0.8609
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	6.2	0.8854
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	7.7	0.8632
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	8.0	0.7976
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	8.0	0.8792
AT3G56870			unknown protein		Lus10018851 [exp]	8.5	0.8695
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	11.0	0.8415

Compare expression of checked genes

Lus10032431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.