Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) AT5G02910 70 / 6e-13 F-box/RNI-like superfamily protein (.1.2) AT5G02930 69 / 1e-12 F-box/RNI-like superfamily protein (.1) AT5G53635 67 / 9e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) AT5G02920 62 / 7e-11 F-box/RNI-like superfamily protein (.1) AT5G56690 62 / 2e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G56420 62 / 3e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G55030 61 / 4e-10 RNI-like superfamily protein (.1) AT3G62440 61 / 7e-10 SAF1 secondary wall thickening-associated F-box 1, F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023042 [exp] 589 / 0 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10029587 [exp] 362 / 2e-123 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 363 / 1e-122 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10029586 [exp] 336 / 7e-113 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10029589 [exp] 338 / 1e-111 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 320 / 4e-107 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10006318 [exp] 321 / 2e-103 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10006319 [exp] 276 / 2e-91 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10029588 [exp] 226 / 2e-72 AT1G69630 54 / 2e-08 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 123 / 2e-31 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 117 / 1e-29 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.015G011200 [exp] 94 / 3e-21 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.011G104200 [exp] 82 / 5e-17 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 80 / 4e-16 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 74 / 2e-14 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 67 / 8e-12 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024200 [exp] 63 / 1e-10 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024300 [exp] 59 / 4e-09 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024600 [exp] 57 / 1e-08 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10032432 pacid=23168627 polypeptide=Lus10032432 locus=Lus10032432.g ID=Lus10032432.BGIv1.0 annot-version=v1.0 ATGGCAGCCAGAGGAGGAGTTGACAGATTAAGCAATCTCCCAGACCCCATTATTCACCACATCCTCTCCTTCCTCGACACAAAATCTGTGGTCAAAACTT GTGTATTGTCCAAGCAGTGGGAGTGCACCTGGAAACATGTTCATACTCTGAATCTGAATCTCTACTTCAGTGAATTCGAGAGGTACGAAACCTTTGTTGA GAAAGTCTTGTCCCTACGCTATCCGCTTCATGTTGGCAAGGTTATATGGTCCACATTTTCCTACTCTGACGCTCCTGATGGTTGCGAGTTTTATCTGCTC AAAAGGGTCGTCCAATATGCAGTGTCTCATGGTGCTCAACATTTCTGCCTACAACCCAGAAATTACTATGAACCTTATATTTCTCTTCTAAAATTGTTTT ATTCCATCCCTGACATTGTAAGAACCCTAGAATTAGTGCGGTTTGACATCGATTGTCGACCTGTATGTTCTAGATTCCAGTTGCTAACAACATTAAAACT GGTGAGCTGTCGGTTCTTAACTGATAGAGAGCTTTTTGATCCTTTTTCTCAATTTCCCTGTTTGAATCATTTGGTATTGCGACATTGCTCGTGGGCAAGT GAAGGCGGTGATCACCAACCTGTGAGATTGAGGGTTTCCGGACTCGAGTTAGGCAGGTTGAGCCTCTTAGCCATTAATGTGTGGAAGCTGGAAATATTTG CGCCCAAACTCAAATATTTGAAATTGTCAACTCGGGAAATAATGGAGTTTTCAGAGCTAACCCTTCCGTCCCTTGTTCATGCTGATATTACAAACCATTG GGGATATAGTGACGATAACGATTATGCTGTTGACGAAGAACATTTGGTCATCATGTCCCATGGTATACATAACGTGGAATATCTGACGCTGTGCAAAGAG ATCAACGAGGAAGTCCGTAGGAAGTCCAGGTTTCTAGAGCTGCAAGATTGTCCGTTTCCGAAATTGAAGAAGTTGATCTTGAAGTGCGACTCCGACGAAG AAATACCTTACAAGACGAGTACTAGGGAAACTCCCGAACCTCGTATTGCATTAGCAGGAAATTCATTGATAAAGCAATCACAAGCAGCATCTCCCGCCAT TGCATATACCAGACCTCCAGCAAAGCCTAGCCTTGGAACGGCGGAACATCTACAGAAGCGCACCCACACCGAGAGGACACACCGGAACAAAGCTTACCCT CCATGTAACCTGTTGTTTCTAAAATAG
AA sequence Show only first row Show all	>Lus10032432 pacid=23168627 polypeptide=Lus10032432 locus=Lus10032432.g ID=Lus10032432.BGIv1.0 annot-version=v1.0 MAARGGVDRLSNLPDPIIHHILSFLDTKSVVKTCVLSKQWECTWKHVHTLNLNLYFSEFERYETFVEKVLSLRYPLHVGKVIWSTFSYSDAPDGCEFYLL KRVVQYAVSHGAQHFCLQPRNYYEPYISLLKLFYSIPDIVRTLELVRFDIDCRPVCSRFQLLTTLKLVSCRFLTDRELFDPFSQFPCLNHLVLRHCSWAS EGGDHQPVRLRVSGLELGRLSLLAINVWKLEIFAPKLKYLKLSTREIMEFSELTLPSLVHADITNHWGYSDDNDYAVDEEHLVIMSHGIHNVEYLTLCKE INEEVRRKSRFLELQDCPFPKLKKLILKCDSDEEIPYKTSTRETPEPRIALAGNSLIKQSQAASPAIAYTRPPAKPSLGTAEHLQKRTHTERTHRNKAYP PCNLLFLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10032432 [exp]	0	1
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10024023 [exp]	3.2	0.8168
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	3.3	0.8394
AT3G62080			SNF7 family protein (.1.2)		Lus10009262 [exp]	4.0	0.7856
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	6.6	0.8082
AT3G27050			unknown protein		Lus10032042 [exp]	11.8	0.8058
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10041888 [exp]	16.3	0.8163
					Lus10035529 [exp]	22.9	0.7797
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	23.0	0.7836
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	28.5	0.7816
AT5G36930			Disease resistance protein (TI...		Lus10026961 [exp]	34.1	0.7839

Compare expression of checked genes

Lus10032432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.