Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10810 41 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029587 [exp] 260 / 3e-84 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 205 / 2e-62 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 199 / 2e-60 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10006318 [exp] 204 / 1e-59 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 188 / 2e-55 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10029589 [exp] 185 / 1e-53 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10023042 [exp] 177 / 8e-53 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 166 / 7e-48 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10008245 [exp] 141 / 3e-39 AT1G69630 42 / 3e-04 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087200 [exp] 52 / 2e-08 AT4G10810 60 / 2e-13 unknown protein Potri.003G143800 [exp] 51 / 2e-08 AT4G10810 60 / 2e-13 unknown protein Potri.015G002100 [exp] 55 / 4e-08 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032433 pacid=23168458 polypeptide=Lus10032433 locus=Lus10032433.g ID=Lus10032433.BGIv1.0 annot-version=v1.0 ATGTTGACGCAGGAGAATCGCTCCAGGGAGGAGAAAAAGGCGGAGATCACGGTGGTGCTAACCCAGCTGGCCATGTTGTTTATGCTGTCCACCGAGACGA CGCTCGCGGTGTCGTCATTGGCTTCCTTGTTTTCCATGGGTGGATCAAAAGGAGTTGGAGGGAAAATTGGGGGAATTCGGGAGATTGTTCGGGGAGGATT TGGAAACCCTAATTGCTGGAAAATGAAGAAAGATCAACGTCTGGCCGATGAGAGAGAATCGAGTCCCATGTTTAAGAAAGGCAAGGTTTTATGGCGCACA GGTGCGTGGCCTCTTGATGCTCCTGATGGTAGTGAGTTTAGTCTGCTCAGCAGGGTCGTCCAATATGCTGTTTCCAATGGTTCTCAACAGTTAGACCTAC GACTGTCCAGAAATCATGATGACGACAGTATCCCTGTTCTCGAATTGTTTGATTCCATCTCTAACACTATAACAACCCTACAATTAGTATGGTTTGACCT CGAATGTCGACCTGTACCTTCTGCATTCCAGTTGCTGACGACGTTAAAGTTGTATGATTGTTGGTTCTTAACCGATGACGAGCTGGTCGAACCCTTTTCT CAATTTCCCTGTCTGAAAGATTTGGTCTTGGATAATTGCTCGTGGCCTGTACGTGAAGATGATGACCATGATATTAGATTCAGGATTTTGGGACTCAGAG CTGAGGTAACCTTCCCGGCCCTCGTTCATGCTGATATTGGATGCCATTTCGGGGGCCCTTTATGTGACTACGGCGATGTTCTCATAGAAGATCTGGTCCT CATGTTCCATGGTCTACATAACGTGGAATCTCTGATGCTAGGAAAGGAAGTCTGCAAGGTTCTCTGTAGGATGTCCAAGTTTCTAGAGCAACATCCCTGT CCTTCTACGAAACTGAAGAAGTTGAATTTGGAGTTCGTCTCGAAGGATGGCATACCTTATAAGGTTTTGGATAGTTACTTCAATAACCTTGGGGCAAGGA AAGCTGAAACACTTGAAGCTGCAGATGATACTGAACCTAAGTCCATTTGGCAGAAGCTTCATCTGGTTTATTTTGAACTTGCCGAGTTCTTGTAA
AA sequence Show only first row Show all	>Lus10032433 pacid=23168458 polypeptide=Lus10032433 locus=Lus10032433.g ID=Lus10032433.BGIv1.0 annot-version=v1.0 MLTQENRSREEKKAEITVVLTQLAMLFMLSTETTLAVSSLASLFSMGGSKGVGGKIGGIREIVRGGFGNPNCWKMKKDQRLADERESSPMFKKGKVLWRT GAWPLDAPDGSEFSLLSRVVQYAVSNGSQQLDLRLSRNHDDDSIPVLELFDSISNTITTLQLVWFDLECRPVPSAFQLLTTLKLYDCWFLTDDELVEPFS QFPCLKDLVLDNCSWPVREDDDHDIRFRILGLRAEVTFPALVHADIGCHFGGPLCDYGDVLIEDLVLMFHGLHNVESLMLGKEVCKVLCRMSKFLEQHPC PSTKLKKLNLEFVSKDGIPYKVLDSYFNNLGARKAETLEAADDTEPKSIWQKLHLVYFELAEFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032433 [exp]	0	1
					Lus10038255 [exp]	1.0	0.9244
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	2.4	0.9084
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	2.8	0.8806
					Lus10009357 [exp]	3.9	0.8645
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	4.2	0.8640
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	4.6	0.8602
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	4.7	0.8032
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10019762 [exp]	4.9	0.7988
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	6.2	0.8111
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	6.9	0.8873

Compare expression of checked genes

Lus10032433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.