Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24040 522 / 0 TREHALASE1, ATTRE1 trehalase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023035 [exp] 865 / 0 AT4G24040 667 / 0.0 trehalase 1 (.1) Lus10023034 [exp] 677 / 0 AT4G24040 683 / 0.0 trehalase 1 (.1) Lus10032435 [exp] 648 / 0 AT4G24040 653 / 0.0 trehalase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144000 [exp] 642 / 0 AT4G24040 706 / 0.0 trehalase 1 (.1) Potri.001G087100 [exp] 640 / 0 AT4G24040 685 / 0.0 trehalase 1 (.1) Potri.003G143900 [exp] 622 / 0 AT4G24040 692 / 0.0 trehalase 1 (.1) Potri.006G068300 [exp] 139 / 8e-40 AT4G24040 156 / 9e-46 trehalase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF01204 [flax] [poplar] Trehalase Trehalase
Representative CDS sequence Show only first row Show all	>Lus10032434 pacid=23168686 polypeptide=Lus10032434 locus=Lus10032434.g ID=Lus10032434.BGIv1.0 annot-version=v1.0 ATGGCGGAGTATTTGGATCCCGCGGGAAGTGATCTCCTGGCGCATGAGCCGTTAGATATTGTGGCGGAGCCTGATGGGTTCTTGCCCAAAGTGGAGAATC CTGAGGTGAGGGCTTGGGCTCTGGAAGTTCATTCCTTGTGGAAGATTCTCATCAGGAAAGTGTCTGGGGAAGTTTTGGAGCATCCTGAACGTCACACTCT GCTTCCCTTGCCTGAACCTATGGTTATTCCTGGTTCGCGTTTTCTGGAGGTTTATTACTGGGATTCTTACTGGGTTATCAGGGGTCTGATGGCTAGCAAG ATGTATGACACTGCCAAGTCCATAGTGACTAATCTGATATACCTTTTGGATACATATGGCCATGTTCTGAATGGTGCAAGGTCCTATTATACCAACCGAA GTGAGCCTCCTCTGTTAAGTGCAATGGTCTCTGAGATATACACTAGGACAGAGGACATGGAATTTGCCAGGAAGGCACTACCAGCACTGATCAAAGAGCA CAAATTTTGGACTTCTGGCAAACATGTGATTACAATTCAGGACGCTCAAGGTGTCAAATATAATTTAAGTAGGTATTTTGCAATGTGGAACAAAGCTAGG CCTGAATCTGGCACCATTGATAAGGCAGCTGCTGCTAAGCTCTCTAATGATGGCCTTGAGAAGCAGCTATTTTACAGGGAAGTGGCATCAACTGCTGAGT CAGGGTGGGATTTTAGTACTAGATGGATGAGAGATACTACCGACTACACGACACTGTCCACCACATCCATTTTTCCTGTGGATTTGAACACTTACTTGCT GAAGCTGGAACTTGACATCGCCTTCCTGGCAAACGTCACCGGAGAAGAAACTGTTGCAAAAGGTTTCTTGGAAGCCTCCCAAGCAAGAAAGCAGGCTATA CAATCTGTGTTCTGGAATTCTGAGAAAGGGCAGTGGTTTGATTACTGGGTTAATGATGATGAATCCTCATACAAGGACTCTCAAACTCACACATGGAAAG TTTCCAACCAAAACCAGAACGCATTTGCTTCTAACTTCACCCCATTTTGGATCGATCTGTTCCATTCAGACACAAATTTGGCAGAGCAAGTGACGGAAAG TCTTCAAAGTTCTGGCCTTGTACTCGATGCCGGGATTGCCACTTCCCTAACAAACTCAGGACAACAATGGGACTTTCCAAATGGGTGGCCGCCACTGCAG CACCAGATAGTTGAAGAAAAGCTAGACGTGCGAGCCTGTGGCGAGTTTGGAGGAGGTGGAGAATATGTCTCTCAGACTGGTTTCGGGTGGTCAAATGGAG TTGTTCTGGCCTTCCTGGAGGAGTTCGGTTGGCCTCAGGACAGGAAGATAGGCTGCTAA
AA sequence Show only first row Show all	>Lus10032434 pacid=23168686 polypeptide=Lus10032434 locus=Lus10032434.g ID=Lus10032434.BGIv1.0 annot-version=v1.0 MAEYLDPAGSDLLAHEPLDIVAEPDGFLPKVENPEVRAWALEVHSLWKILIRKVSGEVLEHPERHTLLPLPEPMVIPGSRFLEVYYWDSYWVIRGLMASK MYDTAKSIVTNLIYLLDTYGHVLNGARSYYTNRSEPPLLSAMVSEIYTRTEDMEFARKALPALIKEHKFWTSGKHVITIQDAQGVKYNLSRYFAMWNKAR PESGTIDKAAAAKLSNDGLEKQLFYREVASTAESGWDFSTRWMRDTTDYTTLSTTSIFPVDLNTYLLKLELDIAFLANVTGEETVAKGFLEASQARKQAI QSVFWNSEKGQWFDYWVNDDESSYKDSQTHTWKVSNQNQNAFASNFTPFWIDLFHSDTNLAEQVTESLQSSGLVLDAGIATSLTNSGQQWDFPNGWPPLQ HQIVEEKLDVRACGEFGGGGEYVSQTGFGWSNGVVLAFLEEFGWPQDRKIGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032434 [exp]	0	1
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10031008 [exp]	2.4	0.7752
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	3.5	0.7838
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10013315 [exp]	4.9	0.7560
AT1G33340			ENTH/ANTH/VHS superfamily prot...		Lus10032674 [exp]	4.9	0.7860
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040425 [exp]	9.4	0.7197
AT1G06640			2-oxoglutarate (2OG) and Fe(II...		Lus10013314 [exp]	9.4	0.7457
					Lus10032314 [exp]	10.0	0.7731
AT2G34050			unknown protein		Lus10007055 [exp]	14.2	0.6006
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024573 [exp]	15.2	0.7485
AT5G12390		FIS1B	FISSION 1B, Tetratricopeptide ...		Lus10009707 [exp]	17.0	0.6942

Compare expression of checked genes

Lus10032434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.